Dynamic Habitat Models For Estuary Dependent Chinook Salmon
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Dynamic Habitat Models For Estuary Dependent Chinook Salmon
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Author : Melanie Jeanne Davis
language : en
Publisher:
Release Date : 2019
Dynamic Habitat Models For Estuary Dependent Chinook Salmon written by Melanie Jeanne Davis and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2019 with categories.
A complex mosaic of estuarine habitats is postulated to bolster the growth and survival of juvenile Chinook salmon by diversifying the availability and configuration of prey and refugia. Consequently, efforts are underway along the North American Pacific Coast to return modified coastal ecosystems to historical or near-historical conditions, but restoring habitats are often more sensitive to anthropogenic or climate-mediated disturbance than relict (unaltered) habitats. Estuaries are expected to experience longer inundation durations as sea-levels rise, leading to reductions in intertidal emergent marshes, mudflats, and eelgrass beds. Furthermore, rising ocean temperatures may have metabolic consequences for fall-run populations of Chinook salmon, which tend to out-migrate during the spring and summer. Extensive monitoring programs have allowed managers to assess the initial benefits of management efforts (including restoration) for juvenile salmon at local and regional scales, but at present they have limited options for predicting and responding to the concurrent effects of climate change in restoring and relict coastal ecosystems. For my dissertation I addressed this gap in knowledge using a comprehensive monitoring dataset from the restoring Nisqually River Delta in southern Puget Sound, Washington. I focused on the following questions: 1) How do juvenile Chinook salmon prey consumption and dietary energy density vary throughout a mosaic of estuarine habitats, and is this variation related to differences in physiological condition? 2) How do among-habitat differences in thermal regime and prey consumption affect the bioenergetic growth potential of juvenile Chinook salmon? 3) How will shifts in the estuarine habitat mosaic vary under different sea-level rise and management scenarios? and 4) How will these climate- and management-mediated shifts in the estuarine habitat mosaic impact habitat quality for juvenile Chinook salmon? To address the first question, I used stomach content and stable isotope analyses to analyze the diets of wild and hatchery Chinook salmon captured in different estuarine habitats during the out-migration season (March-July of 2014 and 2015). I also linked measures of stomach fullness and dietary energy density to body condition. To address the second question, I used a bioenergetics model to determine how among-habitat differences in water temperature and diet might affect juvenile Chinook salmon growth. To address the third question, I designed and calibrated a marsh accretion model and decision support tool using post-restoration monitoring data sets and spatial coverages. Finally, to address the fourth question, I combined output from the marsh accretion model, a hydrological model, and measurements of prey availability into a spatially explicit version of the bioenergetics model to assess the habitat quality and growth rate potential of the entire estuarine habitat mosaic under different sea-level rise and management scenarios. When considered in tandem, these chapters represent a novel approach to habitat management. Assessments of juvenile salmon diet and physiology, marsh accretion models, and bioenergetics models have been independently implemented along the Pacific Coast, but the amalgamation of all three approaches into a single, spatially explicit analysis represents a novel and significant contribution to the scientific literature. In conducting these analyses for the Nisqually River Delta, some major themes emerged regarding the importance and vulnerability of specific habitats. An integrative diet analysis using stomach contents and stable isotopes found distinct dietary niches between wild and hatchery Chinook salmon. Wild fish were more likely to utilize the freshwater tidal forested and transitional brackish marsh habitats along the main stem river, where energy-rich insect drift made up most of their dietary biomass. The availability and consumption of insect prey resulted in distinct benefits to body condition and growth, as determined by direct physiological measurements and output from the habitat-specific bioenergetics model. These findings highlight the importance of freshwater and brackish emergent marsh habitats with overhanging vegetation, which can regulate water temperatures and supply insect drift. Unfortunately, freshwater tidal forests, brackish marshes, and low and high elevation emergent salt marshes are highly vulnerable to sea-level rise, especially when geological and anthropogenic features limit sediment accretion or lateral expansion. When spatial layers from the marsh accretion model were incorporated into the spatially explicit version of the bioenergetics model, output indicated that loss of low and high salt marsh reduced the amount of prey available for juvenile salmon, thus decreasing modeled growth rate potential. In all, these findings highlight the importance of preserving the estuarine habitat mosaic for out-migrating juvenile salmon, especially as tidal regimes and ocean temperatures continue to shift through time.
Habitat Suitability Index Models And Instream Flow Suitability Curves
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Author : Robert F. Raleigh
language : en
Publisher:
Release Date : 1986
Habitat Suitability Index Models And Instream Flow Suitability Curves written by Robert F. Raleigh and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 1986 with Chinook salmon categories.
Fish And Fisheries In Estuaries
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Author : Alan K. Whitfield
language : en
Publisher: John Wiley & Sons
Release Date : 2022-02-18
Fish And Fisheries In Estuaries written by Alan K. Whitfield and has been published by John Wiley & Sons this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-02-18 with Technology & Engineering categories.
Das zweibändige Werk Fish and Fisheries in Estuaries: A Global Perspective enthält eine Darstellung des aktuellen Wissensstandes über Fische in Ästuaren. In Beiträgen von mehr als fünfzig international anerkannten Forschern und Experten für Ichthyologie in Ästuaren präsentiert dieses wegweisende Übersichtswerk die Themen Fischbestände und funktionelle Gruppen, Rekrutierung und Produktion in Ästuaren, Ernährungsökologie und trophische Dynamik, Erhaltung von Fischen in Ästuaren und viele mehr. In dreizehn ausführlichen Kapiteln werden die wichtigsten Aspekte zu Fischen und Fischerei in Ästuaren rund um die Welt beschrieben. Es wird die Biologie der Fische in Ästuargewässern und ihre Verbindung zu den dortigen Ökosystemen betrachtet, und es wird analysiert, wie sich die menschengemachte Industrialisierung und globale Ereignisse wie der Klimawandel auf einheimische und andere Arten auswirken. Weitere Themen sind die Vielfalt der Lebensräume, das Verhalten von Fischen bei der Nahrungssuche, Instrumente und Modelle der Umwelttechnik, Gefahren und Risiken für Fische und Fischerei in Ästuaren sowie die Gesundheit der Umwelt in Ästuaren. Dieses maßgebliche Referenzwerk enthält detaillierte Informationen über die Biologie und Ökologie von Fischen und Fischerei in Ästuaren und bietet außerdem: * Eine Betrachtung aktueller Ansätze und künftiger Forschungsrichtungen, die darauf abzielen, ein Gleichgewicht zwischen der Nutzung und der Erhaltung von Fischen in Ästuaren zu erreichen * Eine Erörterung der Umweltqualitätsziele sowie der nachhaltigen Fischerei und Bewirtschaftung der Ästuare * Eine Untersuchung, wie sich die zunehmende Nutzung von Ressourcen wie Nahrung, Raum und Wasser durch den Menschen auf die Fischerei in den Ästuaren auswirkt * Zahlreiche internationale Fallstudien zum Fischereimanagement, zu bedrohten Arten, zur Sanierung von Ästuaren, zur Fortpflanzung und Ontogenese und weiteren Themen * Eine Darstellung der Studien- und Probenahmeverfahren, der Feldausrüstung sowie der Verarbeitung, Analyse und Interpretation der Daten Das Werk Fish and Fisheries in Estuaries: A Global Perspective ist ein unverzichtbares Hilfsmittel und eine Referenzquelle für Fischbiologen, Fischereiwissenschaftler, Ökologen und Umweltwissenschaftler, Gewässerökologen, Naturschutzbiologen sowie Studierende der höheren Semester und Dozenten im Bereich Fischbiologie und Fischerei.
Ecology Of Salmonids In Estuaries Around The World
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Author : Colin D. Levings
language : en
Publisher: UBC Press
Release Date : 2016-06-20
Ecology Of Salmonids In Estuaries Around The World written by Colin D. Levings and has been published by UBC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-06-20 with Nature categories.
Biologists have long marvelled at how anadromous salmonids – fish that pass from rivers into oceans and back – survive as they migrate between these two very different environments. Yet, relatively little is understood about what happens to salmonids in the estuaries where they make this transition from fresh to salt water. This book distills the current knowledge of how eighteen salmonid species around the world (including salmon, steelhead, char, and trout) are adapted to estuaries. It discusses why the waters where rivers and oceans meet are critical to salmonid survival and how these vital habitats can be preserved and recovered.
Juvenile Chinook Salmon Oncorhynchus Tshawytscha Life History Diversity And Growth Variability In A Large Freshwater Tidal Estuary
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Author : Pascale A. L. Goertler
language : en
Publisher:
Release Date : 2014
Juvenile Chinook Salmon Oncorhynchus Tshawytscha Life History Diversity And Growth Variability In A Large Freshwater Tidal Estuary written by Pascale A. L. Goertler and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014 with categories.
For many fish and wildlife species, a mosaic of available habitats is required to complete their life cycle, and is considered necessary to ensure population stability and persistence. Particularly for young animals, nursery habitats provide opportunities for rapid growth and high survival during this vulnerable life stage. My thesis focuses on juvenile Chinook salmon (Oncorhynchus tshawytscha) and their use of estuarine wetlands as nursery habitat. Estuaries are highly productive systems representing a mosaic of habitats connecting rivers to the sea, and freshwater tidal estuaries provide abundant prey communities, shade, refuge from predation and transitional habitat for the osmoregulatory changes experienced by anadromous fishes. I will be discussing the freshwater tidal wetland habitat use of juvenile Chinook salmon in the Columbia River estuary, which are listed under the Endangered Species Act. I used otolith microstructural growth estimates and prey consumption to measure rearing habitat quality. This sampling effort was designed to target as much genetic diversity as possible, and individual assignment to regional stocks of origin was used to describe the diversity of juvenile Chinook salmon groups inhabiting the estuary. Diversity is important for resilience, and in salmon biocomplexity within fish stocks has been shown to ensure collective productivity despite environmental change. However much of the research which links diversity to resilience in salmon has focused on the adult portion of the life cycle and many resource management policies oversimplify juvenile life history diversity. When this oversimplification of juvenile life history diversity is applied to salmon conservation it may be ignoring critical indicators for stability. Therefore in addition to genetic diversity I also explore methods for better defining juvenile life history diversity and its application in salmon management, such as permitting requirements, habitat restoration, hydropower practices and hatchery management. This study addresses how juvenile salmon growth changes among a range of wetland habitats in the freshwater tidal portion of the Columbia River estuary and how growth variation describes and contributes to life history diversity. To do this, I incorporated otolith microstructure, individual assignment to regional stock of origin, GIS habitat mapping and diet composition, in three habitats (mainstem river, tributary confluence and backwater channel) along ~130 km of the upper estuary. For my first chapter I employed a generalized linear model (GLM) to test three hypotheses: juvenile Chinook growth was best explained by (1) temporal factors, (2) habitat use, or (3) demographic characteristics, such as stock of origin or the timing of seaward migration. I found that variation in growth was best explained by habitat type and an interaction between fork length and month of capture. Juvenile Chinook salmon grew faster in backwater channel habitat and later in the summer. I also found that mid-summer and late summer/fall subyearlings had the highest estuarine growth rates. When compared to other studies in the basin these juvenile Chinook grew on average 0.23, 0.11-0.43 mm/d in the freshwater tidal estuary, similar to estimates in the brackish estuary, but ~4 times slower than those in the plume and upstream reservoirs. However, survival studies from the system elucidated a possible tradeoff between growth and survival in the Columbia River basin. These findings present a unique example of the complexity in understanding the influences of the many processes that generate variation in growth rate for juvenile anadromous fish inhabiting estuaries. In my second chapter, I used otolith microstructure and growth trends produced in a dynamic factor analysis (DFA, a multivariate time series method only recently being used in fisheries) to identify the life history variation in juvenile Chinook salmon caught in the Columbia River estuary over a two-year period (2010-2012). I used genetic assignment to stock of origin and capture location and date with growth trajectories, as a proxy for habitat transitions, to reconstruct life history types. DFA estimated four to five growth trends were present in juvenile Chinook salmon caught in the Columbia River estuary, diversity currently being simplified in many management practices. Regional stocks and habitats did not display divergent growth histories, but the marked hatchery fish did ordinate very similarly in the trend loadings from the DFA analysis, suggesting that hatchery fish may not experience the same breadth of growth variability as wild fish. I was not able to quantify juvenile life history diversity, and juvenile Chinook life history diversity remains difficult to catalog and integrate into species conservation and habitat restoration for resource management. However, by expanding our understanding of how juvenile Chinook salmon experience their freshwater rearing environment we improve our capacity to conserve and manage salmon populations. The findings from my thesis provide the necessary information for a restoration framework to link habitat features with salmon management goals, such as juvenile growth, wild and genetic origin and life history diversity.
Pre Restoration Habitat Use By Chinook Salmon In The Nisqually Estuary Using Otolith Analysis
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Author : Angela Lind-Null
language : en
Publisher:
Release Date : 2009
Pre Restoration Habitat Use By Chinook Salmon In The Nisqually Estuary Using Otolith Analysis written by Angela Lind-Null and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009 with Chinook salmon categories.
"The Nisqually Fall Chinook population is one of 27 stocks in the Puget Sound evolutionarily significant unit listed as threatened under the Federal Endangered Species Act (ESA). Preservation and extensive restoration of the Nisqually delta ecosystem is currently taking place to assist in recovery of the stock as juvenile Fall Chinook salmon are dependent upon the estuary. A pre-restoration baseline that includes characterization of life history types, estuary residence times, growth rates, and habitat use is needed to evaluate the potential response of hatchery and natural origin Chinook salmon to restoration efforts and determine restoration success. Otolith analysis was selected to examine Chinook salmon life history, growth, and residence in the Nisqually Estuary. Previously funded work on wild samples collected in 2004 established the growth rate and length of residence associated with various habitats. The purpose of the current study is to build on the previous work by incorporating otolith microstructure analysis from 2005 (second sampling year), to verify findings from 2004, and to evaluate between-year variation in otolith microstructure. Our results from this second year of analysis indicated no inter-annual variation in the appearance of the tidal delta check (TDCK) and delta-flats check (DFCK). However, a new life history type (fry migrant) was observed on samples collected in 2005. Fish caught in the tidal delta regardless of capture date spent an average of 17 days in the tidal delta. There was a corresponding increase in growth rate as the fish migrated from freshwater (FW) to tidal delta to nearshore (NS) habitats. Fish grew 33 percent faster in the tidal delta than in FW habitat and slightly faster (14 percent) in the delta flats (DF) habitat compared to the tidal delta."--Abstract.
Suisun Marsh
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Author : Peter B. Moyle
language : en
Publisher: Univ of California Press
Release Date : 2014-03-26
Suisun Marsh written by Peter B. Moyle and has been published by Univ of California Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-03-26 with Nature categories.
One of California's most remarkable wetlands, Suisun Marsh is the largest tidal marsh on the West Coast and a major feature of the San Francisco Estuary. This productive and unique habitat supports endemic species, is a nursery for native fishes, and is a vital link for migratory waterfowl. The 6,000-year-old marsh has been affected by human activity, and humans will continue to have significant impacts on the marsh as the sea level rises and cultural values shift in the century ahead. This study includes in-depth information about the ecological and human history of Suisun Marsh, its abiotic and biotic characteristics, agents of ecological change, and alternative futures facing this ecosystem.
Estuaries
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Author : Stephen J. Jordan
language : en
Publisher:
Release Date : 2012
Estuaries written by Stephen J. Jordan and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2012 with Estuaries categories.
Estuaries are minor geographical features at the global scale, but have major importance for society and the world's economies. This book, with case studies from three continents, offers a perspective on estuaries as ecosystems that are intimately linked to society in both positive and negative ways. As focal points of trade, industry, energy production, fisheries, and tourism, estuaries provide a bounty of services to society; they are also centres of human population and vulnerable to the accompanying environmental stresses. This book covers a wide range of topics, from the definition and classification of estuaries, to chemical and physical properties, ecological processes, habitat values, fisheries, and tools for improving management and policy.
Ecology Of Atlantic Salmon And Brown Trout
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Author : Bror Jonsson
language : en
Publisher: Springer Science & Business Media
Release Date : 2011-05-03
Ecology Of Atlantic Salmon And Brown Trout written by Bror Jonsson and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2011-05-03 with Science categories.
Destruction of habitat is the major cause for loss of biodiversity including variation in life history and habitat ecology. Each species and population adapts to its environment, adaptations visible in morphology, ecology, behaviour, physiology and genetics. Here, the authors present the population ecology of Atlantic salmon and brown trout and how it is influenced by the environment in terms of growth, migration, spawning and recruitment. Salmonids appeared as freshwater fish some 50 million years ago. Atlantic salmon and brown trout evolved in the Atlantic basin, Atlantic salmon in North America and Europe, brown trout in Europe, Northern Africa and Western Asia. The species live in small streams as well as large rivers, lakes, estuaries, coastal seas and oceans, with brown trout better adapted to small streams and less well adapted to feeding in the ocean than Atlantic salmon. Smolt and adult sizes and longevity are constrained by habitat conditions of populations spawning in small streams. Feeding, wintering and spawning opportunities influence migratory versus resident lifestyles, while the growth rate influences egg size and number, age at maturity, reproductive success and longevity. Further, early experiences influence later performance. For instance, juvenile behaviour influences adult homing, competition for spawning habitat, partner finding and predator avoidance. The abundance of wild Atlantic salmon populations has declined in recent years; climate change and escaped farmed salmon are major threats. The climate influences through changes in temperature and flow, while escaped farmed salmon do so through ecological competition, interbreeding and the spreading of contagious diseases. The authors pinpoint essential problems and offer suggestions as to how they can be reduced. In this context, population enhancement, habitat restoration and management are also discussed. The text closes with a presentation of what the authors view as major scientific challenges in ecological research on these species.
Canadian Journal Of Fisheries And Aquatic Sciences
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Author :
language : en
Publisher:
Release Date : 2007
Canadian Journal Of Fisheries And Aquatic Sciences written by and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2007 with Aquatic sciences categories.