Algorithms On Strings Trees And Sequences
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Algorithms On Strings Trees And Sequences
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Author : Dan Gusfield
language : en
Publisher: Cambridge University Press
Release Date : 1997-05-28
Algorithms On Strings Trees And Sequences written by Dan Gusfield and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 1997-05-28 with Computers categories.
String algorithms are a traditional area of study in computer science. In recent years their importance has grown dramatically with the huge increase of electronically stored text and of molecular sequence data (DNA or protein sequences) produced by various genome projects. This book is a general text on computer algorithms for string processing. In addition to pure computer science, the book contains extensive discussions on biological problems that are cast as string problems, and on methods developed to solve them. It emphasises the fundamental ideas and techniques central to today's applications. New approaches to this complex material simplify methods that up to now have been for the specialist alone. With over 400 exercises to reinforce the material and develop additional topics, the book is suitable as a text for graduate or advanced undergraduate students in computer science, computational biology, or bio-informatics. Its discussion of current algorithms and techniques also makes it a reference for professionals.
Algorithms On Strings Trees And Sequences
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Author : Dan Gusfield
language : en
Publisher: Cambridge University Press
Release Date : 1997-05-28
Algorithms On Strings Trees And Sequences written by Dan Gusfield and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 1997-05-28 with Computers categories.
This book describes a range of string problems in computer science and molecular biology and the algorithms developed to solve them.
Algorithms On Strings
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Author : Maxime Crochemore
language : en
Publisher: Cambridge University Press
Release Date : 2007-04-09
Algorithms On Strings written by Maxime Crochemore and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2007-04-09 with Computers categories.
The book is intended for lectures on string processes and pattern matching in Master's courses of computer science and software engineering curricula. The details of algorithms are given with correctness proofs and complexity analysis, which make them ready to implement. Algorithms are described in a C-like language. The book is also a reference for students in computational linguistics or computational biology. It presents examples of questions related to the automatic processing of natural language, to the analysis of molecular sequences, and to the management of textual databases.
Jewels Of Stringology Text Algorithms
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Author : Maxime Crochemore
language : en
Publisher: World Scientific
Release Date : 2002-09-16
Jewels Of Stringology Text Algorithms written by Maxime Crochemore and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 2002-09-16 with Computers categories.
The term “stringology” is a popular nickname for text algorithms, or algorithms on strings. This book deals with the most basic algorithms in the area. Most of them can be viewed as “algorithmic jewels” and deserve reader-friendly presentation. One of the main aims of the book is to present several of the most celebrated algorithms in a simple way by omitting obscuring details and separating algorithmic structure from combinatorial theoretical background. The book reflects the relationships between applications of text-algorithmic techniques and the classification of algorithms according to the measures of complexity considered. The text can be viewed as a parade of algorithms in which the main purpose is to discuss the foundations of the algorithms and their interconnections. One can partition the algorithmic problems discussed into practical and theoretical problems. Certainly, string matching and data compression are in the former class, while most problems related to symmetries and repetitions in texts are in the latter. However, all the problems are interesting from an algorithmic point of view and enable the reader to appreciate the importance of combinatorics on words as a tool in the design of efficient text algorithms.In most textbooks on algorithms and data structures, the presentation of efficient algorithms on words is quite short as compared to issues in graph theory, sorting, searching, and some other areas. At the same time, there are many presentations of interesting algorithms on words accessible only in journals and in a form directed mainly at specialists. This book fills the gap in the book literature on algorithms on words, and brings together the many results presently dispersed in the masses of journal articles. The presentation is reader-friendly; many examples and about two hundred figures illustrate nicely the behaviour of otherwise very complex algorithms.
Algorithms And Computation
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Author : Rudolf Fleischer
language : en
Publisher: Springer
Release Date : 2004-12-06
Algorithms And Computation written by Rudolf Fleischer and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2004-12-06 with Computers categories.
This volume contains the proceedings of the 15th Annual International Sym- sium on Algorithms and Computation (ISAAC 2004), held in Hong Kong, 20–22 December, 2004. In the past, it has been held in Tokyo (1990), Taipei (1991), Nagoya (1992), Hong Kong (1993), Beijing (1994), Cairns (1995), Osaka (1996), Singapore (1997), Taejon (1998), Chennai (1999), Taipei (2000), Christchurch (2001), Vancouver (2002), and Kyoto (2003). ISAAC is an annual international symposium that covers a wide range of topics,namelyalgorithmsandcomputation.Themainpurposeofthesymposium is to provide a forum for researchers working in the active research community of algorithms and the theory of computation to present and exchange new ideas. In response to our call for papers we received 226 submissions. The task of selectingthepapersinthisvolumewasdonebyourprogramcommitteeandother referees. After a thorough review process the committee selected 76 papers, the decisions being based on originality and relevance to the ?eld of algorithms and computation. We hope all accepted papers will eventually appear in scienti?c journals in a more polished form. Two special issues, one of Algorithmica and one of the International Journal of Computational Geometry and Applications, with selected papers from ISAAC 2004 are in preparation. Thebeststudentpaperawardwillbegivenfor“Geometricoptimizationpr- lems over sliding windows” by Bashir S. Sadjad and Timothy M. Chan from the University of Waterloo. Two eminent invited speakers, Prof. Erik D. Demaine, MIT, and Prof. David M. Mount, University of Maryland, also contributed to this volume.
Algorithms On Strings Trees And Sequences
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Author : Dan Gusfield
language : en
Publisher:
Release Date : 1997
Algorithms On Strings Trees And Sequences written by Dan Gusfield and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 1997 with Computational biology categories.
String algorithms are a traditional area of study in computer science. In recent years their importance has grown dramatically with the huge increase of electronically stored text and of molecular sequence data (DNA or protein sequences) produced by various genome projects. This 1997 book is a general text on computer algorithms for string processing. In addition to pure computer science, the book contains extensive discussions on biological problems that are cast as string problems, and on methods developed to solve them. It emphasises the fundamental ideas and techniques central to today's applications. New approaches to this complex material simplify methods that up to now have been for the specialist alone. With over 400 exercises to reinforce the material and develop additional topics, the book is suitable as a text for graduate or advanced undergraduate students in computer science, computational biology, or bio-informatics. Its discussion of current algorithms and techniques also makes it a reference for professionals.
Spanning Trees And Optimization Problems
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Author : Bang Ye Wu
language : en
Publisher: CRC Press
Release Date : 2004-01-27
Spanning Trees And Optimization Problems written by Bang Ye Wu and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2004-01-27 with Computers categories.
The design of approximation algorithms for spanning tree problems has become an exciting and important area of theoretical computer science and also plays a significant role in emerging fields such as biological sequence alignments and evolutionary tree construction. While work in this field remains quite active, the time has come to collect under
Average Case Analysis Of Algorithms On Sequences
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Author : Wojciech Szpankowski
language : en
Publisher: John Wiley & Sons
Release Date : 2011-10-14
Average Case Analysis Of Algorithms On Sequences written by Wojciech Szpankowski and has been published by John Wiley & Sons this book supported file pdf, txt, epub, kindle and other format this book has been release on 2011-10-14 with Mathematics categories.
A timely book on a topic that has witnessed a surge of interest over the last decade, owing in part to several novel applications, most notably in data compression and computational molecular biology. It describes methods employed in average case analysis of algorithms, combining both analytical and probabilistic tools in a single volume. * Tools are illustrated through problems on words with applications to molecular biology, data compression, security, and pattern matching. * Includes chapters on algorithms and data structures on words, probabilistic and analytical models, inclusion-exclusion principles, first and second moment methods, subadditive ergodic theorem and large deviations, elements of information theory, generating functions, complex asymptotic methods, Mellin transform and its applications, and analytic poissonization and depoissonization. * Written by an established researcher with a strong international reputation in the field.
Flexible Pattern Matching In Strings
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Author : Gonzalo Navarro
language : en
Publisher: Cambridge University Press
Release Date : 2002-05-27
Flexible Pattern Matching In Strings written by Gonzalo Navarro and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2002-05-27 with Computers categories.
Presents recently developed algorithms for searching for simple, multiple and extended strings, regular expressions, exact and approximate matches.