Biomolecules Conformational Changes Studied By Simulations And Enhanced Sampling
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Biomolecules Conformational Changes Studied By Simulations And Enhanced Sampling
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Author : Yui Tik (Andrew) Pang
language : en
Publisher: Springer Nature
Release Date : 2024-09-26
Biomolecules Conformational Changes Studied By Simulations And Enhanced Sampling written by Yui Tik (Andrew) Pang and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-09-26 with Science categories.
This thesis illuminates the critical roles biomolecules, from small molecules to proteins, play in cellular functionality, particularly highlighting their conformational changes in response to environmental cues or binding events—a cornerstone concept in drug design as well as the manifestations of disease. It explores the conformational flexibility of small molecules and proteins, essential for predicting drug interactions and understanding biological processes. Through advanced molecular dynamics simulations and enhanced sampling techniques, this research offers unprecedented insights into the structural dynamics of three distinct biomolecular systems: the capsid assembly modulator AT130, the passenger domain of pertactin, and the SARS-CoV-2 spike protein. Each system represents a unique facet of biological complexity, underscoring the thesis's contribution to our understanding of biomolecular behavior across various scales. Furthermore, the thesis advances the field by updating the Force Field Toolkit for improved simulation accuracy. This work not only showcases the adaptability and importance of simulation techniques in modern biological research but also paves the way for novel therapeutic strategies by deepening our understanding of biomolecular dynamics.
Chemical Theory And Multiscale Simulation In Biomolecules
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Author : Guohui Li
language : en
Publisher: Elsevier
Release Date : 2024-03-29
Chemical Theory And Multiscale Simulation In Biomolecules written by Guohui Li and has been published by Elsevier this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-03-29 with Science categories.
Chemical Theory and Multiscale Simulation in Biomolecules: From Principles to Case Studies helps readers understand what simulation is, what information modeling of biomolecules can provide, and how to compare this information with experiments. Beginning with an introduction to computational theory for modeling, the book goes on to describe how to control the conditions of modeling systems and possible strategies for time-cost savings in computation. Part Two further outlines key methods, with step-by-step guidance supporting readers in studying and practicing simulation processes. Part Three then shows how these theories are controlled and applied in practice, through examples and case studies on varied applications. This book is a practical guide for new learners, supporting them in learning and applying molecular modeling in practice, whilst also providing more experienced readers with the knowledge needed to gain a deep understanding of the theoretical background behind key methods. - Presents computational theory alongside case studies to help readers understand the use of simulation in practice - Includes extensive examples of different types of simulation methods and approaches to result analysis - Provides an overview of the current academic frontier and research challenges, encouraging creativity and directing attention to current problems
Advanced Sampling And Modeling In Molecular Simulations For Slow And Large Scale Biomolecular Dynamics
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Author : Xiakun Chu
language : en
Publisher: Frontiers Media SA
Release Date : 2022-01-07
Advanced Sampling And Modeling In Molecular Simulations For Slow And Large Scale Biomolecular Dynamics written by Xiakun Chu and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-01-07 with Science categories.
Protein Folding Dynamics And Stability
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Author : Prakash Saudagar
language : en
Publisher: Springer Nature
Release Date : 2023-05-27
Protein Folding Dynamics And Stability written by Prakash Saudagar and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-05-27 with Science categories.
This book describes recent important advancements in protein folding dynamics and stability research, as well as explaining fundamentals and examining potential methodological approaches in protein science. In vitro, in silico, and in vivo method based research of how the stability and folding of proteins help regulate the cellular dynamics and impact cell function that are crucial in explaining various physiological and pathological processes. This book offers a comprehensive coverage on various techniques and related recent developments in the experimental and computational methods of protein folding, dynamics, and stability studies. The book is also structured in such a way as to summarize the latest developments in the fiddle and key concepts to ensure that readers can understand advanced concepts as well as the fundamental big picture. And most of all, fresh insights are provided into the convergence of protein science and technology. Protein Folding Dynamics and Stability is an ideal guide to the field that will be of value for all levels of researchers and advanced graduate students with training in biochemical laboratory research.
Graduate Aptitude Test Biotechnology Dbt Pg Question Bank Book 3000 Questions With Detail Explanation
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Author : DIWAKAR EDUCATION HUB
language : en
Publisher: DIWAKAR EDUCATION HUB
Release Date : 2024-03-07
Graduate Aptitude Test Biotechnology Dbt Pg Question Bank Book 3000 Questions With Detail Explanation written by DIWAKAR EDUCATION HUB and has been published by DIWAKAR EDUCATION HUB this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-03-07 with Science categories.
Graduate Aptitude Test Biotechnology [DBT-PG] Practice Sets 3000 + Question Answer Chapter Wise Book As Per Updated Syllabus Highlights of Question Answer – Covered All 13 Chapters of Latest Syllabus Question As Per Syllabus The Chapters are- 1.Biomolecules-structure and functions 2.Viruses- structure and classification 3.Prokaryotic and eukaryotic cell structure 4.Molecular structure of genes and chromosomes 5.Major bioinformatics resources and search tools 6.Restriction and modification enzyme 7.Production of secondary metabolites by plant suspension cultures; 8.Animal cell culture; media composition and growth conditions 9.Chemical engineering principles applied to biological system 10. Engineering principle of bioprocessing – 11.Tissue culture and its application, In Each Chapter[Unit] Given 230+ With Explanation In Each Unit You Will Get 230 + Question Answer Based on Exam Pattern Total 3000 + Questions Answer with Explanation Design by Professor & JRF Qualified Faculties
Computational Methods To Study The Structure And Dynamics Of Biomolecules And Biomolecular Processes
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Author : Adam Liwo
language : en
Publisher: Springer
Release Date : 2018-12-19
Computational Methods To Study The Structure And Dynamics Of Biomolecules And Biomolecular Processes written by Adam Liwo and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-12-19 with Technology & Engineering categories.
This book provides a comprehensive overview of modern computer-based techniques for analyzing the structure, properties and dynamics of biomolecules and biomolecular processes. It is organized in four main parts; the first one deals with methodology of molecular simulations; the second one with applications of molecular simulations; the third one introduces bioinformatics methods and the use of experimental information in molecular simulations; the last part reports on selected applications of molecular quantum mechanics. This second edition has been thoroughly revised and updated to include the latest progresses made in the respective field of research.
Biomolecular Modelling And Simulations
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Author :
language : en
Publisher: Academic Press
Release Date : 2014-10-11
Biomolecular Modelling And Simulations written by and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-10-11 with Science categories.
Published continuously since 1944, the Advances in Protein Chemistry and Structural Biology series is the essential resource for protein chemists. Each volume brings forth new information about protocols and analysis of proteins. Each thematically organized volume is guest edited by leading experts in a broad range of protein-related topics. - Describes advances in biomolecular modelling and simulations - Chapters are written by authorities in their field - Targeted to a wide audience of researchers, specialists, and students - The information provided in the volume is well supported by a number of high quality illustrations, figures, and tables
Innovations In Biomolecular Modeling And Simulations
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Author : Tamar Schlick
language : en
Publisher: Royal Society of Chemistry
Release Date : 2012
Innovations In Biomolecular Modeling And Simulations written by Tamar Schlick and has been published by Royal Society of Chemistry this book supported file pdf, txt, epub, kindle and other format this book has been release on 2012 with Biomolecules categories.
This two volume set describes innovations in biomolecular modeling and simulation, in both the algorithmic and application fronts.
Systems Medicine
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Author :
language : en
Publisher: Academic Press
Release Date : 2020-08-24
Systems Medicine written by and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-08-24 with Science categories.
Technological advances in generated molecular and cell biological data are transforming biomedical research. Sequencing, multi-omics and imaging technologies are likely to have deep impact on the future of medical practice. In parallel to technological developments, methodologies to gather, integrate, visualize and analyze heterogeneous and large-scale data sets are needed to develop new approaches for diagnosis, prognosis and therapy. Systems Medicine: Integrative, Qualitative and Computational Approaches is an innovative, interdisciplinary and integrative approach that extends the concept of systems biology and the unprecedented insights that computational methods and mathematical modeling offer of the interactions and network behavior of complex biological systems, to novel clinically relevant applications for the design of more successful prognostic, diagnostic and therapeutic approaches. This 3 volume work features 132 entries from renowned experts in the fields and covers the tools, methods, algorithms and data analysis workflows used for integrating and analyzing multi-dimensional data routinely generated in clinical settings with the aim of providing medical practitioners with robust clinical decision support systems. Importantly the work delves into the applications of systems medicine in areas such as tumor systems biology, metabolic and cardiovascular diseases as well as immunology and infectious diseases amongst others. This is a fundamental resource for biomedical students and researchers as well as medical practitioners who need to need to adopt advances in computational tools and methods into the clinical practice. Encyclopedic coverage: ‘one-stop’ resource for access to information written by world-leading scholars in the field of Systems Biology and Systems Medicine, with easy cross-referencing of related articles to promote understanding and further research Authoritative: the whole work is authored and edited by recognized experts in the field, with a range of different expertise, ensuring a high quality standard Digitally innovative: Hyperlinked references and further readings, cross-references and diagrams/images will allow readers to easily navigate a wealth of information
Experiments And Simulations A Pas De Deux To Unravel Biological Function
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Author : Massimiliano Bonomi
language : en
Publisher: Frontiers Media SA
Release Date : 2022-01-19
Experiments And Simulations A Pas De Deux To Unravel Biological Function written by Massimiliano Bonomi and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-01-19 with Science categories.