Cellular Potts Models
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Cellular Potts Models
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Author : Marco Scianna
language : en
Publisher: CRC Press
Release Date : 2013-03-26
Cellular Potts Models written by Marco Scianna and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2013-03-26 with Mathematics categories.
This work shows how the cellular Potts model can be used as a framework for model building and how extended models can achieve even better biological practicality, accuracy, and predictive power. It focuses on ways to integrate and interface the basic cellular Potts model at the mesoscopic scale with approaches that accurately model microscopic dynamics. These extensions are designed to create a nested and hybrid environment, where the evolution of a biological system is realistically driven by the constant interplay and flux of information between the different levels of description.
Single Cell Based Models In Biology And Medicine
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Author : Alexander Anderson
language : en
Publisher: Springer Science & Business Media
Release Date : 2007-08-07
Single Cell Based Models In Biology And Medicine written by Alexander Anderson and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2007-08-07 with Mathematics categories.
Many different single-cell-based models have been developed and applied to biological and medical problems. Computational approaches used are Monte-Carlo simulations, energy minimisation techniques, volume conservation laws, solutions of the equations of motion for each individual cell or for each point on the cell membrane. They differ in the level of detail that defines the cell structure and subsequently in the number of individual cells that the model can incorporate. This volume presents a collection of mathematical and computational single-cell-based models and their application. The main sections cover four general model groupings: hybrid cellular automata, cellular potts, lattice-free cells, and viscoelastic cells. Each section is introduced by a discussion of the applicability of the particular modelling approach and its advantages and disadvantages, which will make the book suitable for students starting research in mathematical biology as well as scientists modelling multicellular processes.
Cellular Automaton Modeling Of Biological Pattern Formation
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Author : Andreas Deutsch
language : en
Publisher: Birkhäuser
Release Date : 2018-03-09
Cellular Automaton Modeling Of Biological Pattern Formation written by Andreas Deutsch and has been published by Birkhäuser this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-03-09 with Mathematics categories.
This text explores the use of cellular automata in modeling pattern formation in biological systems. It describes several mathematical modeling approaches utilizing cellular automata that can be used to study the dynamics of interacting cell systems both in simulation and in practice. New in this edition are chapters covering cell migration, tissue development, and cancer dynamics, as well as updated references and new research topic suggestions that reflect the rapid development of the field. The book begins with an introduction to pattern-forming principles in biology and the various mathematical modeling techniques that can be used to analyze them. Cellular automaton models are then discussed in detail for different types of cellular processes and interactions, including random movement, cell migration, adhesive cell interaction, alignment and cellular swarming, growth processes, pigment cell pattern formation, tissue development, tumor growth and invasion, and Turing-type patterns and excitable media. In the final chapter, the authors critically discuss possibilities and limitations of the cellular automaton approach in modeling various biological applications, along with future research directions. Suggestions for research projects are provided throughout the book to encourage additional engagement with the material, and an accompanying simulator is available for readers to perform their own simulations on several of the models covered in the text. QR codes are included within the text for easy access to the simulator. With its accessible presentation and interdisciplinary approach, Cellular Automaton Modeling of Biological Pattern Formation is suitable for graduate and advanced undergraduate students in mathematical biology, biological modeling, and biological computing. It will also be a valuable resource for researchers and practitioners in applied mathematics, mathematical biology, computational physics, bioengineering, and computer science. PRAISE FOR THE FIRST EDITION “An ideal guide for someone with a mathematical or physical background to start exploring biological modelling. Importantly, it will also serve as an excellent guide for experienced modellers to innovate and improve their methodologies for analysing simulation results.” —Mathematical Reviews
Modeling Cell Dynamics On Micropatterned Substrates With A Cellular Potts Model
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Author :
language : en
Publisher:
Release Date : 2015
Modeling Cell Dynamics On Micropatterned Substrates With A Cellular Potts Model written by and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015 with categories.
Modeling 3d Cell Shape In Structured Environments With The Cellular Potts Model
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Author : Rabea Link
language : en
Publisher:
Release Date : 2023*
Modeling 3d Cell Shape In Structured Environments With The Cellular Potts Model written by Rabea Link and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023* with categories.
Cellular Automata
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Author : Peter M.A. Sloot
language : en
Publisher: Springer Science & Business Media
Release Date : 2004-10-14
Cellular Automata written by Peter M.A. Sloot and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2004-10-14 with Computers categories.
This book constitutes the refereed proceedings of the 6th International Conference on Cellular Automata for Research and Industry, ACRI 2004, held in Amsterdam, The Netherlands in October 2004. The 60 revised full papers and 30 poster papers presented were carefully reviewed and selected from 150 submissions. The papers are devoted to methods and theory; evolved cellular automata; traffic, networks, and communication; applications in science and engineering; biomedical applications, natural phenomena and ecology; and social and economical applications.
Systems Biology In Cancer Research And Drug Discovery
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Author : Asfar S Azmi
language : en
Publisher: Springer Science & Business Media
Release Date : 2012-09-29
Systems Biology In Cancer Research And Drug Discovery written by Asfar S Azmi and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2012-09-29 with Medical categories.
Systems Biology in Cancer Research and Drug Discovery provides a unique collection of chapters, by world-class researchers, describing the use of integrated systems biology and network modeling in the cancer field where traditional tools have failed to deliver expected promise. This book touches four applications/aspects of systems biology (i) in understanding aberrant signaling in cancer (ii) in identifying biomarkers and prognostic markers especially focused on angiogenesis pathways (iii) in unwinding microRNAs complexity and (iv) in anticancer drug discovery and in clinical trial design. This book reviews the state-of-the-art knowledge and touches upon cutting edge newer and improved applications especially in the area of network modeling. It is aimed at an audience ranging from students, academics, basic researcher and clinicians in cancer research. This book is expected to benefit the field of translational cancer medicine by bridging the gap between basic researchers, computational biologists and clinicians who have one ultimate goal and that is to defeat cancer.
Mathematical Models And Methods For Planet Earth
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Author : Alessandra Celletti
language : en
Publisher: Springer Science & Business Media
Release Date : 2014-03-05
Mathematical Models And Methods For Planet Earth written by Alessandra Celletti and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-03-05 with Science categories.
In 2013 several scientific activities have been devoted to mathematical researches for the study of planet Earth. The current volume presents a selection of the highly topical issues presented at the workshop “Mathematical Models and Methods for Planet Earth”, held in Roma (Italy), in May 2013. The fields of interest span from impacts of dangerous asteroids to the safeguard from space debris, from climatic changes to monitoring geological events, from the study of tumor growth to sociological problems. In all these fields the mathematical studies play a relevant role as a tool for the analysis of specific topics and as an ingredient of multidisciplinary problems. To investigate these problems we will see many different mathematical tools at work: just to mention some, stochastic processes, PDE, normal forms, chaos theory.
Physical Models Of Cell Motility
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Author : Igor S. Aranson
language : en
Publisher: Springer
Release Date : 2015-12-16
Physical Models Of Cell Motility written by Igor S. Aranson and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-12-16 with Science categories.
This book surveys the most recent advances in physics-inspired cell movement models. This synergetic, cross-disciplinary effort to increase the fidelity of computational algorithms will lead to a better understanding of the complex biomechanics of cell movement, and stimulate progress in research on related active matter systems, from suspensions of bacteria and synthetic swimmers to cell tissues and cytoskeleton.Cell motility and collective motion are among the most important themes in biology and statistical physics of out-of-equilibrium systems, and crucial for morphogenesis, wound healing, and immune response in eukaryotic organisms. It is also relevant for the development of effective treatment strategies for diseases such as cancer, and for the design of bioactive surfaces for cell sorting and manipulation. Substrate-based cell motility is, however, a very complex process as regulatory pathways and physical force generation mechanisms are intertwined. To understand the interplay between adhesion, force generation and motility, an abundance of computational models have been proposed in recent years, from finite element to immerse interface methods and phase field approaches.This book is primarily written for physicists, mathematical biologists and biomedical engineers working in this rapidly expanding field, and can serve as supplementary reading for advanced graduate courses in biophysics and mathematical biology. The e-book incorporates experimental and computer animations illustrating various aspects of cell movement./div
Mechanisms Of Morphogenesis
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Author : Jamie A. Davies
language : en
Publisher: Academic Press
Release Date : 2013-02-18
Mechanisms Of Morphogenesis written by Jamie A. Davies and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2013-02-18 with Science categories.
Morphogenesis is the set of processes that generate shape and form in the embryo--an important area within developmental biology. An exciting and up-to-the-minute account of the very latest research into the factors that create biological form, Mechanisms of Morphogenesis, second edition is a text reference on the mechanisms of cell and tissue morphogenesis in a diverse array of organisms, including prokaryotes, animals, plants and fungi. By combining hard data with computer modeling, Mechanisms of Morphogenesis, second edition equips readers with a much broader understanding of the scope of modern research than is otherwise available. The book focuses on the ways in which the genetic program is translated to generate cell shape, to direct cell migration, and to produce the shape, form and rates of growth of the various tissues. Each topic is illustrated with experimental data from real systems, with particular reference to gaps in current knowledge and pointers to future - Includes over 200 four-color figures - Offers an integrated view of theoretical developmental biology and computer modelling with laboratory-based discoveries - Covers experimental techniques as a guide to the reader - Organized around principles and mechanisms, using them to integrate discoveries from a range of organisms and systems