Computational Structural Biology Methods And Applications

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Computational Structural Biology

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Author : Torsten Schwede
language : en
Publisher: World Scientific
Release Date : 2008

Computational Structural Biology written by Torsten Schwede and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 2008 with Science categories.

This is a comprehensive introduction to Landau-Lifshitz equations and Landau-Lifshitz-Maxwell equations, beginning with the work by Yulin Zhou and Boling Guo in the early 1980s and including most of the work done by this Chinese group led by Zhou and Guo since. The book focuses on aspects such as the existence of weak solutions in multi dimensions, existence and uniqueness of smooth solutions in one dimension, relations with harmonic map heat flows, partial regularity and long time behaviors. The book is a valuable reference book for those who are interested in partial differential equations, geometric analysis and mathematical physics. It may also be used as an advanced textbook by graduate students in these fields.

Computational Structural Biology Methods And Applications

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Author : Torsten Schwede
language : en
Publisher: World Scientific
Release Date : 2008-05-02

Computational Structural Biology Methods And Applications written by Torsten Schwede and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 2008-05-02 with Science categories.

Computational structural biology has made tremendous progress over the last two decades, and this book provides a recent and broad overview of such computational methods in structural biology. It covers the impact of computational structural biology on protein structure prediction methods, macromolecular function and protein design, and key methods in drug discovery. It also addresses the computational challenges of experimental approaches in structural biology. In addition to reviewing the current state of computational structural biology, each chapter ends with a brief, visionary discussion on the future outlook, whereby the main challenges for the coming years are elucidated. Written by an international panel of expert contributors, this book can serve as a reference manual for students and practitioners alike.

Handbook Of Computational Chemistry

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Author : Jerzy Leszczynski
language : en
Publisher: Springer Science & Business Media
Release Date : 2012-01-13

Handbook Of Computational Chemistry written by Jerzy Leszczynski and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2012-01-13 with Science categories.

The role the Handbook of Computational Chemistry is threefold. It is primarily intended to be used as a guide that navigates the user through the plethora of computational methods currently in use; it explains their limitations and advantages; and it provides various examples of their important and varied applications. This reference work is presented in three volumes. Volume I introduces the different methods used in computational chemistry. Basic assumptions common to the majority of computational methods based on molecular, quantum, or statistical mechanics are outlined and special attention is paid to the limits of their applicability. Volume II portrays the applications of computational methods to model systems and discusses in detail molecular structures, the modelling of various properties of molecules and chemical reactions. Both ground and excited states properties are covered in the gas phase as well as in solution. This volume also describes Nanomaterials and covers topics such as clusters, periodic, and nano systems. Special emphasis is placed on the environmental effects of nanostructures. Volume III is devoted to the important class of Biomolecules. Useful models of biological systems considered by computational chemists are provided and RNA, DNA and proteins are discussed in detail. This volume presents examples of calcualtions of their properties and interactions and reveals the role of solvents in biologically important reactions as well as the structure function relationship of various classes of Biomolecules.

Advances In Protein Molecular And Structural Biology Methods

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Author : Timir Tripathi
language : en
Publisher: Academic Press
Release Date : 2022-01-14

Advances In Protein Molecular And Structural Biology Methods written by Timir Tripathi and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-01-14 with Science categories.

Advances in Protein Molecular and Structural Biology Methods offers a complete overview of the latest tools and methods applicable to the study of proteins at the molecular and structural level. The book begins with sections exploring tools to optimize recombinant protein expression and biophysical techniques such as fluorescence spectroscopy, NMR, mass spectrometry, cryo-electron microscopy, and X-ray crystallography. It then moves towards computational approaches, considering structural bioinformatics, molecular dynamics simulations, and deep machine learning technologies. The book also covers methods applied to intrinsically disordered proteins (IDPs)followed by chapters on protein interaction networks, protein function, and protein design and engineering. It provides researchers with an extensive toolkit of methods and techniques to draw from when conducting their own experimental work, taking them from foundational concepts to practical application. - Presents a thorough overview of the latest and emerging methods and technologies for protein study - Explores biophysical techniques, including nuclear magnetic resonance, X-ray crystallography, and cryo-electron microscopy - Includes computational and machine learning methods - Features a section dedicated to tools and techniques specific to studying intrinsically disordered proteins

Bioinformatics And Biomedical Engineering

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Author : Ignacio Rojas
language : en
Publisher: Springer
Release Date : 2019-04-30

Bioinformatics And Biomedical Engineering written by Ignacio Rojas and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2019-04-30 with Science categories.

The two-volume set LNBI 11465 and LNBI 11466 constitutes the proceedings of the 7th International Work-Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2019, held in Granada, Spain, in May 2019. The total of 97 papers presented in the proceedings, was carefully reviewed and selected from 301 submissions. The papers are organized in topical sections as follows: Part I: High-throughput genomics: bioinformatics tools and medical applications; omics data acquisition, processing, and analysis; bioinformatics approaches for analyzing cancer sequencing data; next generation sequencing and sequence analysis; structural bioinformatics and function; telemedicine for smart homes and remote monitoring; clustering and analysis of biological sequences with optimization algorithms; and computational approaches for drug repurposing and personalized medicine. Part II: Bioinformatics for healthcare and diseases; computational genomics/proteomics; computationalsystems for modelling biological processes; biomedical engineering; biomedical image analysis; and biomedicine and e-health.

Introduction To Protein Science

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Author : Arthur Lesk
language : en
Publisher: Oxford University Press, USA
Release Date : 2010-03-25

Introduction To Protein Science written by Arthur Lesk and has been published by Oxford University Press, USA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2010-03-25 with Education categories.

Starting by describing the structure of proteins and explaining how these structures can be studied, this book goes on to illustrate the wide range of protein functions by showing how the shape of a protein is intimately linked to its function.

Circadian Rhythms And Biological Clocks Part A

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Author :
language : en
Publisher: Academic Press
Release Date : 2015-01-30

Circadian Rhythms And Biological Clocks Part A written by and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-01-30 with Science categories.

Two new volumes of Methods in Enzymology continue the legacy of this premier serial with quality chapters authored by leaders in the field. Circadian Rhythms and Biological Clocks Part A and Part B is an exceptional resource for anybody interested in the general area of circadian rhythms. As key elements of timekeeping are conserved in organisms across the phylogenetic tree, and our understanding of circadian biology has benefited tremendously from work done in many species, the volume provides a wide range of assays for different biological systems. Protocols are provided to assess clock function, entrainment of the clock to stimuli such as light and food, and output rhythms of behavior and physiology. This volume also delves into the impact of circadian disruption on human health. Contributions are from leaders in the field who have made major discoveries using the methods presented here. - Continues the legacy of this premier serial with quality chapters authored by leaders in the field - Covers research methods in biomineralization science - Keeping with the interdisciplinary nature of the circadian rhythm field, the volume includes diverse approaches towards the study of rhythms, from assays of biochemical reactions in unicellular organisms to monitoring of behavior in humans.

Molecular Modeling And Simulation An Interdisciplinary Guide

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Author : Tamar Schlick
language : en
Publisher: Springer Science & Business Media
Release Date : 2010-08-03

Molecular Modeling And Simulation An Interdisciplinary Guide written by Tamar Schlick and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2010-08-03 with Mathematics categories.

Very broad overview of the field intended for an interdisciplinary audience; Lively discussion of current challenges written in a colloquial style; Author is a rising star in this discipline; Suitably accessible for beginners and suitably rigorous for experts; Features extensive four-color illustrations; Appendices featuring homework assignments and reading lists complement the material in the main text

Research Methodology In Plant Science

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Author : P.S. Narayana
language : en
Publisher: Scientific Publishers
Release Date : 2016-11-01

Research Methodology In Plant Science written by P.S. Narayana and has been published by Scientific Publishers this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-11-01 with Technology & Engineering categories.

The book comprises of different chapters associated with methodology in Plant science (Botany), describing in a simple and comprehensive way. The importance of creativity and motivation in research, the planning and proposal of research project, the description of different techniques involved in research are described in an elaborate way. It also includes the sources/collection of scientific information, method of scientific report/paper/thesis writing etc. The book is also a source of different aspects of research methodology in plant science dealt with in a comprehensive manner tailored to the needs of postgraduate students/research scholars for easy understanding. The book is profusely illustrated. The different chapters described in the book include: Introduction, Microscopy, Plant micro-technique, Smear/Sqush technique, Plant tissue culture, Herbarium technique, Hydrogen ion concentration (pH), Centrifugation, Chromatography, Electrophoresis, Colorimetry, Spectro-photometry, Radio-isotopes in biology and Computers and their application in plant sciences. Chapters on Biostatistics, Biophysics and Bioinformatics have also been included to help the student in the statistical analysis of the results, physical principles involved in the operation of different instruments and basics of bioinformatics. We sincerely hope that this book helps to fill up the lacuna and provides what all that is needed about the research methods required for a scholar/student in plant sciences to pursue their higher studies.

Protein Structure

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Author : Fouad Sabry
language : en
Publisher: One Billion Knowledgeable
Release Date : 2025-03-13

Protein Structure written by Fouad Sabry and has been published by One Billion Knowledgeable this book supported file pdf, txt, epub, kindle and other format this book has been release on 2025-03-13 with Science categories.

Protein structure-Introduces the concept of protein structure, exploring how its threedimensional shape determines its function in biological systems Alpha helix-Discusses the alpha helix, one of the most common secondary structures in proteins, emphasizing its importance in structural biology Protein-Provides a thorough understanding of proteins, their role in cellular functions, and the structural diversity that allows them to perform a vast range of biological tasks Protein biosynthesis-Focuses on the process of translating genetic information into functional proteins, detailing the mechanisms behind protein synthesis Protein quaternary structure-Examines the quaternary structure of proteins, describing how multiple subunits come together to form functional complexes Protein tertiary structure-Explores the threedimensional folding of proteins, including the forces that stabilize this structure and the role of molecular chaperones Protein folding-Provides an indepth look at the process of protein folding, explaining the challenges and mechanisms involved in achieving functional conformations Protein structure prediction-Discusses methods for predicting the structure of proteins based on their amino acid sequences, a key topic in structural bioinformatics Structural bioinformatics-Introduces computational tools and techniques used to analyze protein structures and predict their functions, linking biology with informatics Epitope-Focuses on the concept of epitopes, the specific regions on antigens recognized by antibodies, highlighting their significance in immunology Levinthal's paradox-Discusses Levinthal’s paradox, which illustrates the complexities and challenges in protein folding and how nature overcomes these challenges Ramachandran plot-Explains the Ramachandran plot, a key tool used to visualize the possible conformations of polypeptide chains, helping to assess protein structures Chaperonin-Describes chaperonins, special proteins that assist in the correct folding of other proteins, preventing misfolding and aggregation Protein design-Explores the field of protein design, detailing strategies for designing synthetic proteins with specific functions, bridging biochemistry and engineering Protein–protein interaction-Examines the interactions between proteins, essential for most cellular processes, and discusses techniques to study these interactions Intrinsically disordered proteins-Investigates intrinsically disordered proteins, which lack a fixed structure and play unique roles in cellular regulation and signaling Bacterial translation-Focuses on the translation process in bacteria, offering insights into the mechanisms of protein synthesis at the molecular level Turn (biochemistry)-Explores turns in protein structures, key structural motifs that contribute to the overall protein fold and function Molecular biophysics-Delves into the interdisciplinary field of molecular biophysics, which applies physical principles to understand protein structure and function De novo protein structure prediction-Examines cuttingedge methods for predicting protein structures from scratch, without prior structural data Protein domain-Explores the concept of protein domains, independent functional and structural units within proteins that contribute to their biological activity