Data Science For Neuroimaging
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Data Science For Neuroimaging
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Author : Ariel Rokem
language : en
Publisher: Princeton University Press
Release Date : 2023-12-12
Data Science For Neuroimaging written by Ariel Rokem and has been published by Princeton University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-12-12 with Science categories.
Data science methods and tools—including programming, data management, visualization, and machine learning—and their application to neuroimaging research As neuroimaging turns toward data-intensive discovery, researchers in the field must learn to access, manage, and analyze datasets at unprecedented scales. Concerns about reproducibility and increased rigor in reporting of scientific results also demand higher standards of computational practice. This book offers neuroimaging researchers an introduction to data science, presenting methods, tools, and approaches that facilitate automated, reproducible, and scalable analysis and understanding of data. Through guided, hands-on explorations of openly available neuroimaging datasets, the book explains such elements of data science as programming, data management, visualization, and machine learning, and describes their application to neuroimaging. Readers will come away with broadly relevant data science skills that they can easily translate to their own questions. • Fills the need for an authoritative resource on data science for neuroimaging researchers • Strong emphasis on programming • Provides extensive code examples written in the Python programming language • Draws on openly available neuroimaging datasets for examples • Written entirely in the Jupyter notebook format, so the code examples can be executed, modified, and re-executed as part of the learning process
Data Science For Neuroimaging
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Author : Ariel Rokem
language : en
Publisher: Princeton University Press
Release Date : 2023-11-07
Data Science For Neuroimaging written by Ariel Rokem and has been published by Princeton University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-11-07 with Science categories.
Data science methods and tools—including programming, data management, visualization, and machine learning—and their application to neuroimaging research As neuroimaging turns toward data-intensive discovery, researchers in the field must learn to access, manage, and analyze datasets at unprecedented scales. Concerns about reproducibility and increased rigor in reporting of scientific results also demand higher standards of computational practice. This book offers neuroimaging researchers an introduction to data science, presenting methods, tools, and approaches that facilitate automated, reproducible, and scalable analysis and understanding of data. Through guided, hands-on explorations of openly available neuroimaging datasets, the book explains such elements of data science as programming, data management, visualization, and machine learning, and describes their application to neuroimaging. Readers will come away with broadly relevant data science skills that they can easily translate to their own questions. • Fills the need for an authoritative resource on data science for neuroimaging researchers • Strong emphasis on programming • Provides extensive code examples written in the Python programming language • Draws on openly available neuroimaging datasets for examples • Written entirely in the Jupyter notebook format, so the code examples can be executed, modified, and re-executed as part of the learning process
Handbook Of Neuroimaging Data Analysis
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Author : Hernando Ombao
language : en
Publisher: CRC Press
Release Date : 2016-11-18
Handbook Of Neuroimaging Data Analysis written by Hernando Ombao and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-11-18 with Mathematics categories.
This book explores various state-of-the-art aspects behind the statistical analysis of neuroimaging data. It examines the development of novel statistical approaches to model brain data. Designed for researchers in statistics, biostatistics, computer science, cognitive science, computer engineering, biomedical engineering, applied mathematics, physics, and radiology, the book can also be used as a textbook for graduate-level courses in statistics and biostatistics or as a self-study reference for Ph.D. students in statistics, biostatistics, psychology, neuroscience, and computer science.
Basic Neuroimaging
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Author : Peter Bloomfield
language : en
Publisher: Createspace Independent Publishing Platform
Release Date : 2017-10
Basic Neuroimaging written by Peter Bloomfield and has been published by Createspace Independent Publishing Platform this book supported file pdf, txt, epub, kindle and other format this book has been release on 2017-10 with categories.
Basic Neuroimaging is a textbook born out of passion. With this initiative we are looking to provide a comprehensive background to neuroimaging for students and professionals alike. In this text, we focus on a range of imaging modalities currently used in neurosciences. These include MRI, fMRI, PET, NIRS, EEG, TMS and MEG. After a brief historical description of each, we look at basics of the techniques starting from the data acquisition and finishing with the most successful example of applications. We go on to describe the different statistical approaches to broadly interrogate neuroimaging data and conclude with some representative case studies of neuroimaging in neuroscience and dementia research. This text has been produced in a purely voluntary fashion by a team of early career neuroimaging scientists with unique experiences. We have published with accessibility of information as our key criteria. We hope that you enjoy reading this as much as we enjoyed writing it.
Data Science
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Author : Ivo D. Dinov
language : en
Publisher: Walter de Gruyter GmbH & Co KG
Release Date : 2021-12-06
Data Science written by Ivo D. Dinov and has been published by Walter de Gruyter GmbH & Co KG this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-12-06 with Computers categories.
The amount of new information is constantly increasing, faster than our ability to fully interpret and utilize it to improve human experiences. Addressing this asymmetry requires novel and revolutionary scientific methods and effective human and artificial intelligence interfaces. By lifting the concept of time from a positive real number to a 2D complex time (kime), this book uncovers a connection between artificial intelligence (AI), data science, and quantum mechanics. It proposes a new mathematical foundation for data science based on raising the 4D spacetime to a higher dimension where longitudinal data (e.g., time-series) are represented as manifolds (e.g., kime-surfaces). This new framework enables the development of innovative data science analytical methods for model-based and model-free scientific inference, derived computed phenotyping, and statistical forecasting. The book provides a transdisciplinary bridge and a pragmatic mechanism to translate quantum mechanical principles, such as particles and wavefunctions, into data science concepts, such as datum and inference-functions. It includes many open mathematical problems that still need to be solved, technological challenges that need to be tackled, and computational statistics algorithms that have to be fully developed and validated. Spacekime analytics provide mechanisms to effectively handle, process, and interpret large, heterogeneous, and continuously-tracked digital information from multiple sources. The authors propose computational methods, probability model-based techniques, and analytical strategies to estimate, approximate, or simulate the complex time phases (kime directions). This allows transforming time-varying data, such as time-series observations, into higher-dimensional manifolds representing complex-valued and kime-indexed surfaces (kime-surfaces). The book includes many illustrations of model-based and model-free spacekime analytic techniques applied to economic forecasting, identification of functional brain activation, and high-dimensional cohort phenotyping. Specific case-study examples include unsupervised clustering using the Michigan Consumer Sentiment Index (MCSI), model-based inference using functional magnetic resonance imaging (fMRI) data, and model-free inference using the UK Biobank data archive. The material includes mathematical, inferential, computational, and philosophical topics such as Heisenberg uncertainty principle and alternative approaches to large sample theory, where a few spacetime observations can be amplified by a series of derived, estimated, or simulated kime-phases. The authors extend Newton-Leibniz calculus of integration and differentiation to the spacekime manifold and discuss possible solutions to some of the "problems of time". The coverage also includes 5D spacekime formulations of classical 4D spacetime mathematical equations describing natural laws of physics, as well as, statistical articulation of spacekime analytics in a Bayesian inference framework. The steady increase of the volume and complexity of observed and recorded digital information drives the urgent need to develop novel data analytical strategies. Spacekime analytics represents one new data-analytic approach, which provides a mechanism to understand compound phenomena that are observed as multiplex longitudinal processes and computationally tracked by proxy measures. This book may be of interest to academic scholars, graduate students, postdoctoral fellows, artificial intelligence and machine learning engineers, biostatisticians, econometricians, and data analysts. Some of the material may also resonate with philosophers, futurists, astrophysicists, space industry technicians, biomedical researchers, health practitioners, and the general public.
Connectomics
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Author : Brent C. Munsell
language : en
Publisher: Academic Press
Release Date : 2018-09-12
Connectomics written by Brent C. Munsell and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-09-12 with Computers categories.
Connectomics: Applications to Neuroimaging is unique in presenting the frontier of neuro-applications using brain connectomics techniques. The book describes state-of-the-art research that applies brain connectivity analysis techniques to a broad range of neurological and psychiatric disorders (Alzheimer's, epilepsy, stroke, autism, Parkinson's, drug or alcohol addiction, depression, bipolar, and schizophrenia), brain fingerprint applications, speech-language assessments, and cognitive assessment. With this book the reader will learn: Basic mathematical principles underlying connectomics How connectomics is applied to a wide range of neuro-applications What is the future direction of connectomics techniques. This book is an ideal reference for researchers and graduate students in computer science, data science, computational neuroscience, computational physics, or mathematics who need to understand how computational models derived from brain connectivity data are being used in clinical applications, as well as neuroscientists and medical researchers wanting an overview of the technical methods. Features: Combines connectomics methods with relevant and interesting neuro-applications Covers most of the hot topics in neuroscience and clinical areas Appeals to researchers in a wide range of disciplines: computer science, engineering, data science, mathematics, computational physics, computational neuroscience, as well as neuroscience, and medical researchers interested in the technical methods of connectomics
Electrical Neuroimaging
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Author : Christoph M. Michel
language : en
Publisher: Cambridge University Press
Release Date : 2009-07-23
Electrical Neuroimaging written by Christoph M. Michel and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009-07-23 with Medical categories.
An authoritative reference giving a systematic overview of new electrical imaging methods. Provides a comprehensive and sound introduction to the basics of multichannel recording of EEG and event-related potential (ERP) data, as well as spatio-temporal analysis of the potential fields. Chapters include practical examples of illustrative studies and approaches.
Data Science And Predictive Analytics
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Author : Ivo D. Dinov
language : en
Publisher: Springer Nature
Release Date : 2023-02-16
Data Science And Predictive Analytics written by Ivo D. Dinov and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-02-16 with Computers categories.
This textbook integrates important mathematical foundations, efficient computational algorithms, applied statistical inference techniques, and cutting-edge machine learning approaches to address a wide range of crucial biomedical informatics, health analytics applications, and decision science challenges. Each concept in the book includes a rigorous symbolic formulation coupled with computational algorithms and complete end-to-end pipeline protocols implemented as functional R electronic markdown notebooks. These workflows support active learning and demonstrate comprehensive data manipulations, interactive visualizations, and sophisticated analytics. The content includes open problems, state-of-the-art scientific knowledge, ethical integration of heterogeneous scientific tools, and procedures for systematic validation and dissemination of reproducible research findings. Complementary to the enormous challenges related to handling, interrogating, and understanding massive amounts of complex structured and unstructured data, there are unique opportunities that come with access to a wealth of feature-rich, high-dimensional, and time-varying information. The topics covered in Data Science and Predictive Analytics address specific knowledge gaps, resolve educational barriers, and mitigate workforce information-readiness and data science deficiencies. Specifically, it provides a transdisciplinary curriculum integrating core mathematical principles, modern computational methods, advanced data science techniques, model-based machine learning, model-free artificial intelligence, and innovative biomedical applications. The book’s fourteen chapters start with an introduction and progressively build foundational skills from visualization to linear modeling, dimensionality reduction, supervised classification, black-box machine learning techniques, qualitative learning methods, unsupervised clustering, model performance assessment, feature selection strategies, longitudinal data analytics, optimization, neural networks, and deep learning. The second edition of the book includes additional learning-based strategies utilizing generative adversarial networks, transfer learning, and synthetic data generation, as well as eight complementary electronic appendices. This textbook is suitable for formal didactic instructor-guided course education, as well as for individual or team-supported self-learning. The material is presented at the upper-division and graduate-level college courses and covers applied and interdisciplinary mathematics, contemporary learning-based data science techniques, computational algorithm development, optimization theory, statistical computing, and biomedical sciences. The analytical techniques and predictive scientific methods described in the book may be useful to a wide range of readers, formal and informal learners, college instructors, researchers, and engineers throughout the academy, industry, government, regulatory, funding, and policy agencies. The supporting book website provides many examples, datasets, functional scripts, complete electronic notebooks, extensive appendices, and additional materials.
Targeted Learning In Data Science
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Author : Mark J. van der Laan
language : en
Publisher: Springer
Release Date : 2018-03-28
Targeted Learning In Data Science written by Mark J. van der Laan and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-03-28 with Mathematics categories.
This textbook for graduate students in statistics, data science, and public health deals with the practical challenges that come with big, complex, and dynamic data. It presents a scientific roadmap to translate real-world data science applications into formal statistical estimation problems by using the general template of targeted maximum likelihood estimators. These targeted machine learning algorithms estimate quantities of interest while still providing valid inference. Targeted learning methods within data science area critical component for solving scientific problems in the modern age. The techniques can answer complex questions including optimal rules for assigning treatment based on longitudinal data with time-dependent confounding, as well as other estimands in dependent data structures, such as networks. Included in Targeted Learning in Data Science are demonstrations with soft ware packages and real data sets that present a case that targeted learning is crucial for the next generation of statisticians and data scientists. Th is book is a sequel to the first textbook on machine learning for causal inference, Targeted Learning, published in 2011. Mark van der Laan, PhD, is Jiann-Ping Hsu/Karl E. Peace Professor of Biostatistics and Statistics at UC Berkeley. His research interests include statistical methods in genomics, survival analysis, censored data, machine learning, semiparametric models, causal inference, and targeted learning. Dr. van der Laan received the 2004 Mortimer Spiegelman Award, the 2005 Van Dantzig Award, the 2005 COPSS Snedecor Award, the 2005 COPSS Presidential Award, and has graduated over 40 PhD students in biostatistics and statistics. Sherri Rose, PhD, is Associate Professor of Health Care Policy (Biostatistics) at Harvard Medical School. Her work is centered on developing and integrating innovative statistical approaches to advance human health. Dr. Rose’s methodological research focuses on nonparametric machine learning for causal inference and prediction. She co-leads the Health Policy Data Science Lab and currently serves as an associate editor for the Journal of the American Statistical Association and Biostatistics.
Casting Light On The Dark Side Of Brain Imaging
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Author : Amir Raz
language : en
Publisher: Academic Press
Release Date : 2019-02-15
Casting Light On The Dark Side Of Brain Imaging written by Amir Raz and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2019-02-15 with Psychology categories.
Most people find colorful brain scans highly compelling—and yet, many experts don't. This discrepancy begs the question: What can we learn from neuroimaging? Is brain information useful in fields such as psychiatry, law, or education? How do neuroscientists create brain activation maps and why do we admire them? Casting Light on The Dark Side of Brain Imaging tackles these questions through a critical and constructive lens—separating fruitful science from misleading neuro-babble. In a breezy writing style accessible to a wide readership, experts from across the brain sciences offer their uncensored thoughts to help advance brain research and debunk the craze for reductionist, headline-grabbing neuroscience. This collection of short, enlightening essays is suitable for anyone interested in brain science, from students to professionals. Together, we take a hard look at the science behind brain imaging and outline why this technique remains promising despite its seldom-discussed shortcomings. - Challenges the tendency toward neuro-reductionism - Deconstructs hype through a critical yet constructive lens - Unveils the nature of brain imaging data - Explores emerging brain technologies and future directions - Features a non-technical and accessible writing style