Ecological Genomics
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Ecological Genomics
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Author : Christian R. Landry
language : en
Publisher: Springer Science & Business Media
Release Date : 2013-11-25
Ecological Genomics written by Christian R. Landry and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2013-11-25 with Science categories.
Researchers in the field of ecological genomics aim to determine how a genome or a population of genomes interacts with its environment across ecological and evolutionary timescales. Ecological genomics is trans-disciplinary by nature. Ecologists have turned to genomics to be able to elucidate the mechanistic bases of the biodiversity their research tries to understand. Genomicists have turned to ecology in order to better explain the functional cellular and molecular variation they observed in their model organisms. We provide an advanced-level book that covers this recent research and proposes future development for this field. A synthesis of the field of ecological genomics emerges from this volume. Ecological Genomics covers a wide array of organisms (microbes, plants and animals) in order to be able to identify central concepts that motivate and derive from recent investigations in different branches of the tree of life. Ecological Genomics covers 3 fields of research that have most benefited from the recent technological and conceptual developments in the field of ecological genomics: the study of life-history evolution and its impact of genome architectures; the study of the genomic bases of phenotypic plasticity and the study of the genomic bases of adaptation and speciation.
An Introduction To Ecological Genomics
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Author : Nico M. van Straalen
language : en
Publisher: Oxford University Press
Release Date : 2012
An Introduction To Ecological Genomics written by Nico M. van Straalen and has been published by Oxford University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2012 with Science categories.
The authors also provide a comparative survey of the properties of genomes (genome size, gene families, synteny, and polymorphism) for prokaryotes as well as the main eukaryotic models.
Environmental Genomics
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Author : C. Cristofre Martin
language : en
Publisher: Springer Science & Business Media
Release Date : 2008-01-18
Environmental Genomics written by C. Cristofre Martin and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2008-01-18 with Science categories.
Here is a manual for an environmental scientist who wishes to embrace genomics to answer environmental questions. The volume covers: gene expression profiling, whole genome and chromosome mutation detection, and methods to assay genome diversity and polymorphisms within a particular environment. This book provides a systematic framework for determining environmental impact and ensuring human health and the sustainability of natural populations.
Ecological Genomics
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Author : U. S. Raghavender
language : en
Publisher: Delve Publishing
Release Date : 2018-12
Ecological Genomics written by U. S. Raghavender and has been published by Delve Publishing this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-12 with Science categories.
Ecology is a vast subject with solid genetic, mathematical, and statistical underpinnings. The field is (nature with many standard protocols for both experimental and theoretical studies. With the advent of genome era (since 2000's), even this evergreen field felt a way to enhance its reach by studying individual and population genomes (metagenomics). Many books have been written on the concepts and methodologies of ecological studies. We do not want to add redundancy to the already existing lot of standard textbooks. We will be specifically focusing on populations genetics and genomics in this book. We will adopt a computational approach. In contrast to the age of information, we are in the age of data. Increasing amounts of data are being generated each year, in various disciplines and walks of life, and the need to analyze and create value from this asset is more important than ever. Institutions, individuals, and industries that know what to do with their data and how to do it well, will have a competitive advantage over others that don't tread the same path. Due to this, there will be an increasing demand for people who possess both the analytical and technical abilities to extract valuable insights from data and create valuable and pragmatic solutions that put these insights to practical use. This book provides multiple opportunities to learn how to create value/insights from genomics and other ecological data through a variety of individual projects. The goal of this book is to introduce you to the ecological genomics as a discipline, emphasizing on computational aspects of the population studies. It also attempts to show you how it applies to a variety of different topics. This will make you comfortable enough to apply it in future to projects of your own. Along the way, you'll learn different analytical and programming techniques, and the fact that you are working through an actual project while learning will help cement these concepts and facilitate your understanding of them. I have found this example-based approach to be more fruitful, when compared to a highly technical and theoretical description of topics. I hope that the readers would easily sync with this approach. We have profusely used the freely available open-source packages in Rand Python. The datasets which come preinstalled with these packages, serve as a good starting point in cementing the basic concepts. Each chapter stands on its own, with step-by-step instructions that include code snippets, and with a focus on practical application of computational tools in genomics. Focus is on practical, understanding the concepts ant its application in existing programming environments. We start with a minimal introduction to the subject and quickly shift to programming lessons. We introduce BioPython in second chapter, Several worked examples are given. The third chapter deals with the usage of additional data processing skills specifically applicable to ecological models and examples. In Chapter 4, we introduce the basics of genetics and take the reader to the implementation of next generation sequencing (NGS) concepts in R. The next chapter introduces the basics of NGS data interpretation and the computational ways of addressing it. Chapter 6 introduces the core concepts of population genetics, from an ecological and evolutionary perspective. We introduce the reader to many computational tools and packages as we go on explaining many concepts. In Chapter 7, we introduce population genomics, which borrows the concepts from the previous chapter and presents more advanced analyzes. The final chapter introduces population stratification and the way in which can be addressed using computational tools. We have extensively employed R in this book. Although, Python too has the same set of parallel modules available under different package implementations, we have chosen R for its nice integration with different statistical techniques and corresponding packages. It is my view that a computational take at this important subject is very much needed to get a good grasp of the important concepts. I wish the reader all the very best. Book jacket.
Ecological Genetics
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Author : Andrew Lowe
language : en
Publisher: John Wiley & Sons
Release Date : 2009-04-01
Ecological Genetics written by Andrew Lowe and has been published by John Wiley & Sons this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009-04-01 with Science categories.
Ecological Genetics addresses the fundamental problems of which of the many molecular markers should be used and how the resulting data should be analysed in clear, accessible language, suitable for upper-level undergraduates through to research-level professionals. A very accessible straightforward text to deal with this difficult topic - applying modern molecular techniques to ecological processes. Written by active researchers and teachers within the field. There will be an accompanying web site managed by the authors, comprising of worked examples, test data sets and hyperlinks to relevant web pages.
The Ecological Genomics Of Fungi
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Author : Francis Martin
language : en
Publisher: John Wiley & Sons
Release Date : 2013-12-31
The Ecological Genomics Of Fungi written by Francis Martin and has been published by John Wiley & Sons this book supported file pdf, txt, epub, kindle and other format this book has been release on 2013-12-31 with Science categories.
This unique book covers a broad diversity of fungal systems and provides unique insight into the functions of those fungi in various ecosystems – from soil, to plant, to human. Bringing together fungal genomic information on a variety of lifestyles and traits, the book covers saprotrophism, pathogenesis (including biotrophs, hemibiotrophs, necrotrophs) and symbiosis. Advances in high-throughput sequencing now offer unprecedented opportunities for identification of novel key molecular mechanisms controlling plant-microbe interactions, evolution of fungi and developmentally- and ecologically-relevant traits, this book explores how these massive streams of fungal sequences can be exploited to gain a deeper understanding of the evolution of fungi and their ecological role. Although tremendous progress has been made in recent years in fungal genomics, thanks to the sequencing of over one hundred fungal genomes, until now no book has used this information to bridge fungal genomics, molecular ecology and ecology. Edited by a recognized leader in fungal genomics and soil metagenomics with over a decade of experience, Genomics & Metagenomics for Harnessing the Ecology of Fungi will be a useful resource for the experienced as well as the new researchers entering the field.
Applied Environmental Genomics
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Author : Oliver F... Berry
language : en
Publisher: CSIRO PUBLISHING
Release Date : 2023-12-01
Applied Environmental Genomics written by Oliver F... Berry and has been published by CSIRO PUBLISHING this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-12-01 with Nature categories.
DNA is the essence of life and the original ‘big data’. New technologies are allowing scientists to access and make sense of this information like never before, and they are using it to solve the world’s greatest environmental challenges. Applied Environmental Genomics synthesises the latest and most exciting uses of genomic technologies for environmental science and management. With an emphasis on diversity of applications and real-world demonstrations, leading researchers have contributed detailed chapters on innovative approaches to obtaining critical management-relevant information about the natural world. These chapters are complemented by perspective sections written by environmental managers who describe their experiences using genomics to support evidence-based decisions. Ideal for students, researchers and professionals working in natural resource management and policy, Applied Environmental Genomics is a comprehensive introduction to a fast-moving field that is transforming the practice of environmental management, with profound relevance to industry, government and the public.
Avian Genomics In Ecology And Evolution
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Author : Robert H. S. Kraus
language : en
Publisher: Springer
Release Date : 2019-06-29
Avian Genomics In Ecology And Evolution written by Robert H. S. Kraus and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2019-06-29 with Science categories.
Birds catch the public imagination like no other group of animals; in addition, birders are perhaps the largest non-professional naturalist community. Genomics and associated bioinformatics have revolutionised daily life in just a few decades. At the same time, this development has facilitated the application of genomics technology to ecological and evolutionary studies, including biodiversity and conservation at all levels. This book reveals how the exciting toolbox of genomics offers new opportunities in all areas of avian biology. It presents contributions from prominent experts at the intersection of avian biology and genomics, and offers an ideal introduction to the world of genomics for students, biologists and bird enthusiasts alike. The book begins with a historical perspective on how genomic technology was adopted by bird ecology and evolution research groups. This led, as the book explains, to a revised understanding of avian evolution, with exciting consequences for biodiversity research as a whole. Lastly, these impacts are illustrated using seminal examples and the latest discoveries from avian biology laboratories around the world.
Environmental Genomics And Epigenomics Response Development And Disease
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Author : Qiang Zhang
language : en
Publisher: Frontiers Media SA
Release Date : 2021-07-14
Environmental Genomics And Epigenomics Response Development And Disease written by Qiang Zhang and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-07-14 with Science categories.
Insight On Environmental Genomics
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Author : Denis Faure
language : en
Publisher: Elsevier
Release Date : 2016-07-11
Insight On Environmental Genomics written by Denis Faure and has been published by Elsevier this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-07-11 with Science categories.
Bringing together the latest methodological and scientific progress in the various research areas in the field of Environmental Genomics, this book discusses the characterization of the structure and dynamics of life, the study of the evolution and adaptation of genes and genomes, the analysis of degraded and/or old DNA, and the functional and genomic ecology of populations and communities. It also considers access to the production and sharing of NGS data and the quality of this data. As the product of the collective discussion of the active French scientific community, the book presents not only the latest technologies in the development of new sequencing methods, but also the resulting issues, challenges and prospects, in order to identify those aspects with the greatest potential for modeling and exploring the function of ecosystems. Includes recent updates from the field of environmental genomics Provides details of advances of methods and perspectives of their use Contains a multidisciplinary overview of the environmental sciences including taxonomy, ecology, evolution, and diversity Focuses on the impact of recent technology advances in high-throughput sequencing