Formal Methods For The Analysis Of Biomedical Ontologies
DOWNLOAD
Download Formal Methods For The Analysis Of Biomedical Ontologies PDF/ePub or read online books in Mobi eBooks. Click Download or Read Online button to get Formal Methods For The Analysis Of Biomedical Ontologies book now. This website allows unlimited access to, at the time of writing, more than 1.5 million titles, including hundreds of thousands of titles in various foreign languages. If the content not found or just blank you must refresh this page
Formal Methods For The Analysis Of Biomedical Ontologies
DOWNLOAD
Author : Guo-Qiang Zhang
language : en
Publisher: Springer Nature
Release Date : 2022-11-08
Formal Methods For The Analysis Of Biomedical Ontologies written by Guo-Qiang Zhang and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-11-08 with Computers categories.
The book synthesizes research on the analysis of biomedical ontologies using formal concept analysis, including through auditing, curation, and enhancement. As the evolution of biomedical ontologies almost inevitably involves manual work, formal methods are a particularly useful tool for ontological engineering and practice, particularly in uncovering unexpected "bugs" and content materials. The book first introduces simple but formalized strategies for discovering undesired and incoherent patterns in ontologies before exploring the application of formal concept analysis for semantic completeness. The book then turns to formal concept analysis, a classical approach used in the mathematical treatment of orders and lattices, as an ontological engineering principle, focusing on the structural property of ontologies with respect to its conformation to lattice or not (non-lattice). The book helpfully covers the development of more efficient algorithms for non-lattice detection and extraction required by exhaustive lattice/non-lattice analysis. The book goes on to highlight the power and utility of uncovering non-lattice structure for debugging ontologies and describes methods that leverage the linguistic information in concept names (labels) for ontological analysis. It also addresses visualization and performance evaluation issues before closing with an overview and forward-looking perspectives on the field. This book is intended for graduate students and researchers interested in biomedical ontologies and their applications. It can be a useful supplement for courses on knowledge representation and engineering and also provide readers with a reference for related scientific publications and literature to assist in identifying potential research topics. All mathematical concepts and notations used in this book can be found in standard discrete mathematics textbooks, and the appendix at the end of the book provides a list of key ontological resources, as well as annotated non-lattice and lattice examples that were discovered using the authors' methods, demonstrating how "bugs are fixed" by converting non-lattices to lattices with minimal edit changes.
Formal Methods For Managing And Processing Ontology Alignments
DOWNLOAD
Author : Marcin Pietranik
language : en
Publisher: CRC Press
Release Date : 2024-10-07
Formal Methods For Managing And Processing Ontology Alignments written by Marcin Pietranik and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-10-07 with Computers categories.
Ontologies are formal knowledge representation methods that can provide means for a shared understanding of a given domain. To enable meaningful communication and interoperability between two or more information systems that utilize independently created ontologies, a bridge between them is necessary, often referred to as an ontology alignment. Formal Methods for Managing and Processing Ontology Alignments provides complete ontology alignment lifecycle, including modelling, methods, and maintenance processes. Summarizing the author's research from the past ten years, this book consolidates findings previously published in prestigious international journals and presented at leading conferences. Each chapter is designed to be self-contained, allowing readers to approach the material modularly. The text introduces basic mathematical concepts, and later chapters build upon these foundations, but each focuses on specific aspects of ontology alignment, making the content accessible and easy to follow. Key Features Includes formal definitions of ontologies and ontology alignment along with a set of methods for providing semantics of attributes and relations. Provides application of fuzzy logic in the task of ontology alignment. Contains methods of managing the evolution of ontologies and their alignments. Proposes novel methods of assessing the quality ontology alignment. Situated in the fields of knowledge representation and semantic technologies, this book is an invaluable resource for both academic researchers and practitioners, as well as students looking to deepen their understanding.
Formal Ontology In Information Systems
DOWNLOAD
Author : R. Ferrario
language : en
Publisher: IOS Press
Release Date : 2016-07-06
Formal Ontology In Information Systems written by R. Ferrario and has been published by IOS Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-07-06 with Computers categories.
Ontology, originally a fundamental part of philosophical enquiry, is concerned with the analysis and categorization of what exists. The advent of complex information systems which rely on robust and coherent formal representations of their subject matter has led to a renewed focus on ontological enquiry, and the systematic study of such representations are at the center of the modern discipline of formal ontology. This is now a research focus in domains as diverse as conceptual modeling, database design, software engineering, artificial intelligence, computational linguistics, the life sciences, bioinformatics, geographic information science, knowledge engineering, information retrieval and the semantic web. This book presents the proceedings of the 9th edition of the Formal Ontology in Information Systems conference (FOIS 2016) held in Annecy, France, in July 2016. It contains the 25 full papers delivered at the conference (an acceptance rate of 30.9% for the main track), as well as the abstracts of the 3 keynotes by Gilberto Câmara, Stephen Mumford and Friederike Moltmann. The remainder of the book is divided into the sections: Foundations; Space, Time and Change; Cognition, Language and Semantics; Empiricism and Measurement; Ontology for Engineering; Biomedical Ontologies; and Ontology of Social Reality. The domains addressed by the papers include geography, biomedicine, economics, social reality and engineering, and the book will be of interest to all those working in these fields, as well as to anybody with an interest in formal ontology.
Leveraging Applications Of Formal Methods Verification And Validation Specialized Techniques And Applications
DOWNLOAD
Author : Tiziana Margaria
language : en
Publisher: Springer
Release Date : 2014-09-26
Leveraging Applications Of Formal Methods Verification And Validation Specialized Techniques And Applications written by Tiziana Margaria and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-09-26 with Computers categories.
The two-volume set LNCS 8802 and LNCS 8803 constitutes the refereed proceedings of the 6th International Symposium on Leveraging Applications of Formal Methods, Verification and Validation, ISoLA 2014, held in Imperial, Corfu, Greece, in October 2014. The total of 67 full papers was carefully reviewed and selected for inclusion in the proceedings. Featuring a track introduction to each section, the papers are organized in topical sections named: evolving critical systems; rigorous engineering of autonomic ensembles; automata learning; formal methods and analysis in software product line engineering; model-based code generators and compilers; engineering virtualized systems; statistical model checking; risk-based testing; medical cyber-physical systems; scientific workflows; evaluation and reproducibility of program analysis; processes and data integration in the networked healthcare; semantic heterogeneity in the formal development of complex systems. In addition, part I contains a tutorial on automata learning in practice; as well as the preliminary manifesto to the LNCS Transactions on the Foundations for Mastering Change with several position papers. Part II contains information on the industrial track and the doctoral symposium and poster session.
The Handbook Of Formal Methods In Human Computer Interaction
DOWNLOAD
Author : Benjamin Weyers
language : en
Publisher: Springer
Release Date : 2017-04-24
The Handbook Of Formal Methods In Human Computer Interaction written by Benjamin Weyers and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2017-04-24 with Computers categories.
This book provides a comprehensive collection of methods and approaches for using formal methods within Human-Computer Interaction (HCI) research, the use of which is a prerequisite for usability and user-experience (UX) when engineering interactive systems. World-leading researchers present methods, tools and techniques to design and develop reliable interactive systems, offering an extensive discussion of the current state-of-the-art with case studies which highlight relevant scenarios and topics in HCI as well as presenting current trends and gaps in research and future opportunities and developments within this emerging field. The Handbook of Formal Methods in Human-Computer Interaction is intended for HCI researchers and engineers of interactive systems interested in facilitating formal methods into their research or practical work.
Formal Ontologies Meet Industry
DOWNLOAD
Author : Roberta Ferrario
language : en
Publisher: IOS Press
Release Date : 2009
Formal Ontologies Meet Industry written by Roberta Ferrario and has been published by IOS Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009 with Business & Economics categories.
A collection of papers addressing the multi-shaped character of knowledge, studies and applications in the field of ontology and semantic technology.
Computation Information Cognition
DOWNLOAD
Author : Gordana Dodig Crnkovic
language : en
Publisher: Cambridge Scholars Publishing
Release Date : 2009-03-26
Computation Information Cognition written by Gordana Dodig Crnkovic and has been published by Cambridge Scholars Publishing this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009-03-26 with Language Arts & Disciplines categories.
This book draws together a number of important strands in contemporary approaches to the philosophical and scientific questions that emerge when dealing with the issues of computing, information, cognition and the conceptual issues that arise at their intersections. It discovers and develops the connections at the borders and in the interstices of disciplines and debates, and presents a range of essays that deal with the currently vigorous concerns of the philosophy of information, ontology creation and control, bioinformation and biosemiotics, computational and post- computational ap- proaches to the philosophy of cognitive science, computational linguistics, ethics, and education.
Formal Ontology In Information Systems
DOWNLOAD
Author : Maureen Donnelly
language : en
Publisher: IOS Press
Release Date : 2012
Formal Ontology In Information Systems written by Maureen Donnelly and has been published by IOS Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2012 with Computers categories.
The complex information systems which have evolved in recent decades rely on robust and coherent representations in order to function. Such representations and associated reasoning techniques constitute the modern discipline of formal ontology, which is now applied to fields such as artificial intelligence, computational linguistics, bioinformatics, GIS, conceptual modeling, knowledge engineering, information retrieval, and the semantic web. Ontologies are increasingly employed in a number of complex real-world application domains. For instance, in biology and medicine, more and more principle-based ontologies are being developed for the description of biological and biomedical phenomena. To be effective, such ontologies must work well together, and as they become more widely used, achieving coordinated development presents a significant challenge. This book presents collected articles from the 7th International Conference on Formal Ontologies (FOIS), held in Graz, Austria, in July 2012.FOIS is a forum which brings together representatives of all major communities involved in the development and application of ontologies to explore both theoretical issues and concrete applications in the field. The book is organized in eight sections, each of which deals with the ontological aspects of: bioinformatics; physical entities; artifacts and human resources; ontology evaluation; language and social relations; time and events; representation and the methodological aspects of ontological engineering. Providing a current overview of developments in formal ontology, this book will be of interest to all those whose work involves the application of ontologies, and to anybody wishing to keep abreast of advances in the field.
Building Ontologies With Basic Formal Ontology
DOWNLOAD
Author : Robert Arp
language : en
Publisher: MIT Press
Release Date : 2015-07-31
Building Ontologies With Basic Formal Ontology written by Robert Arp and has been published by MIT Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-07-31 with Science categories.
An introduction to the field of applied ontology with examples derived particularly from biomedicine, covering theoretical components, design practices, and practical applications. In the era of “big data,” science is increasingly information driven, and the potential for computers to store, manage, and integrate massive amounts of data has given rise to such new disciplinary fields as biomedical informatics. Applied ontology offers a strategy for the organization of scientific information in computer-tractable form, drawing on concepts not only from computer and information science but also from linguistics, logic, and philosophy. This book provides an introduction to the field of applied ontology that is of particular relevance to biomedicine, covering theoretical components of ontologies, best practices for ontology design, and examples of biomedical ontologies in use. After defining an ontology as a representation of the types of entities in a given domain, the book distinguishes between different kinds of ontologies and taxonomies, and shows how applied ontology draws on more traditional ideas from metaphysics. It presents the core features of the Basic Formal Ontology (BFO), now used by over one hundred ontology projects around the world, and offers examples of domain ontologies that utilize BFO. The book also describes Web Ontology Language (OWL), a common framework for Semantic Web technologies. Throughout, the book provides concrete recommendations for the design and construction of domain ontologies.
Formal Ontology In Information Systems
DOWNLOAD
Author : B. Bennett
language : en
Publisher: IOS Press
Release Date : 2006-10-26
Formal Ontology In Information Systems written by B. Bennett and has been published by IOS Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2006-10-26 with Computers categories.
Researchers in areas such as artificial intelligence, formal and computational linguistics, biomedical informatics, conceptual modeling, knowledge engineering and information retrieval have come to realise that a solid foundation for their research calls for serious work in ontology, understood as a general theory of the types of entities and relations that make up their respective domains of inquiry. In all these areas, attention is now being focused on the content of information rather than on just the formats and languages used to represent information. The clearest example of this development is provided by the many initiatives growing up around the project of the Semantic Web. And, as the need for integrating research in these different fields arises, so does the realisation that strong principles for building well-founded ontologies might provide significant advantages over ad hoc, case-based solutions. The tools of formal ontology address precisely these needs, but a real effort is required in order to apply such philosophical tools to the domain of information systems. Reciprocally, research in the information sciences raises specific ontological questions which call for further philosophical investigations. The purpose of FOIS is to provide a forum for genuine interdisciplinary exchange in the spirit of a unified effort towards solving the problems of ontology, with an eye to both theoretical issues and concrete applications. This book contains a wide range of areas, all of which are important to the development of formal ontologies.