Gillespie Algorithms For Stochastic Multiagent Dynamics In Populations And Networks
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Gillespie Algorithms For Stochastic Multiagent Dynamics In Populations And Networks
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Author : Naoki Masuda
language : en
Publisher:
Release Date : 2023-01-05
Gillespie Algorithms For Stochastic Multiagent Dynamics In Populations And Networks written by Naoki Masuda and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-01-05 with Mathematics categories.
This Element provides a tutorial on the Gillespie algorithms focusing on social multiagent dynamics and also review their recent extensions. The first main part focuses on simulation of social multiagent dynamics occurring in populations and networks, and the remainder reviews recent extensions of the Gillespie algorithms.
Boolean Networks As Predictive Models Of Emergent Biological Behaviors
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Author : Jordan C. Rozum
language : en
Publisher: Cambridge University Press
Release Date : 2024-03-28
Boolean Networks As Predictive Models Of Emergent Biological Behaviors written by Jordan C. Rozum and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-03-28 with Science categories.
Interacting biological systems at all organizational levels display emergent behavior. Modeling these systems is made challenging by the number and variety of biological components and interactions – from molecules in gene regulatory networks to species in ecological networks – and the often-incomplete state of system knowledge, such as the unknown values of kinetic parameters for biochemical reactions. Boolean networks have emerged as a powerful tool for modeling these systems. This Element provides a methodological overview of Boolean network models of biological systems. After a brief introduction, the authors describe the process of building, analyzing, and validating a Boolean model. They then present the use of the model to make predictions about the system's response to perturbations and about how to control its behavior. The Element emphasizes the interplay between structural and dynamical properties of Boolean networks and illustrates them in three case studies from disparate levels of biological organization.
Multi Agent Systems
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Author : Adelinde M. Uhrmacher
language : en
Publisher: CRC Press
Release Date : 2018-10-08
Multi Agent Systems written by Adelinde M. Uhrmacher and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-10-08 with Computers categories.
Methodological Guidelines for Modeling and Developing MAS-Based Simulations The intersection of agents, modeling, simulation, and application domains has been the subject of active research for over two decades. Although agents and simulation have been used effectively in a variety of application domains, much of the supporting research remains scattered in the literature, too often leaving scientists to develop multi-agent system (MAS) models and simulations from scratch. Multi-Agent Systems: Simulation and Applications provides an overdue review of the wide ranging facets of MAS simulation, including methodological and application-oriented guidelines. This comprehensive resource reviews two decades of research in the intersection of MAS, simulation, and different application domains. It provides scientists and developers with disciplined engineering approaches to modeling and developing MAS-based simulations. After providing an overview of the field’s history and its basic principles, as well as cataloging the various simulation engines for MAS, the book devotes three sections to current and emerging approaches and applications. Simulation for MAS — explains simulation support for agent decision making, the use of simulation for the design of self-organizing systems, the role of software architecture in simulating MAS, and the use of simulation for studying learning and stigmergic interaction. MAS for Simulation — discusses an agent-based framework for symbiotic simulation, the use of country databases and expert systems for agent-based modeling of social systems, crowd-behavior modeling, agent-based modeling and simulation of adult stem cells, and agents for traffic simulation. Tools — presents a number of representative platforms and tools for MAS and simulation, including Jason, James II, SeSAm, and RoboCup Rescue. Complete with over 200 figures and formulas, this reference book provides the necessary overview of experiences with MAS simulation and the tools needed to exploit simulation in MAS for future research in a vast array of applications including home security, computational systems biology, and traffic management.
Computational Statistical Physics
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Author : Lucas Böttcher
language : en
Publisher: Cambridge University Press
Release Date : 2021-08-26
Computational Statistical Physics written by Lucas Böttcher and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-08-26 with Science categories.
Providing a detailed and pedagogical account of the rapidly-growing field of computational statistical physics, this book covers both the theoretical foundations of equilibrium and non-equilibrium statistical physics, and also modern, computational applications such as percolation, random walks, magnetic systems, machine learning dynamics, and spreading processes on complex networks. A detailed discussion of molecular dynamics simulations is also included, a topic of great importance in biophysics and physical chemistry. The accessible and self-contained approach adopted by the authors makes this book suitable for teaching courses at graduate level, and numerous worked examples and end of chapter problems allow students to test their progress and understanding.
Guide To Temporal Networks A Second Edition
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Author : Naoki Masuda
language : en
Publisher: World Scientific
Release Date : 2020-10-05
Guide To Temporal Networks A Second Edition written by Naoki Masuda and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-10-05 with Science categories.
Network science offers a powerful language to represent and study complex systems composed of interacting elements — from the Internet to social and biological systems. A Guide to Temporal Networks presents recent theoretical and modelling progress in the emerging field of temporally varying networks and provides connections between the different areas of knowledge required to address this multi-disciplinary subject. After an introduction to key concepts on networks and stochastic dynamics, the authors guide the reader through a coherent selection of mathematical and computational tools for network dynamics. Perfect for students and professionals, this book is a gateway to an active field of research developing between the disciplines of applied mathematics, physics and computer science, with applications in others including social sciences, neuroscience and biology.This second edition extensively expands upon the coverage of the first edition as the authors expertly present recent theoretical and modelling progress in the emerging field of temporal networks, providing the keys to (and connections between) the different areas of knowledge required to address this multi-disciplinary problem.
Stochastic Population Dynamics In Ecology And Conservation
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Author : Russell Lande
language : en
Publisher:
Release Date : 2003
Stochastic Population Dynamics In Ecology And Conservation written by Russell Lande and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2003 with Mathematics categories.
All populations fluctuate stochastically, creating a risk of extinction that does not exist in deterministic models, with fundamental consequences for both pure and applied ecology. This book provides the most comprehensive introduction to stochastic population dynamics, combining classical background material with a variety of modern approaches, including new and previously unpublished results by the authors, illustrated with examples from bird and mammal populations, and insect communities.Demographic and environmental stochasticity are introduced with statistical methods for estimating them from field data. The long-run growth rate of a population is explained and extended to include age structure with both deomgraphic and environmental stochasticity. Diffusion approximations facilitate the analysis of extinction dynamics and the duration of the final decline. Methods are developed for estimating delayed density dependence from population time series using life history data. Metapopulation viability and the spatial scale of population fluctuations and extinction risk are analyzed. Stochastic dynamics and statistical uncertainty in population parameters are incorporated in Population Viability Analysis and strategies for sustainable harvesting.Statistics of species diversity measures and species abundance distributions are described, with implications for rapid assessments of biodiversity, and methods are developed for partitioning species diversity into additive components. Analysis of the stochastic dynamics of a tropical butterfly community in space and time indicates that most of the variance in the species abundance distribution is due to ecological heterogeneity among species, so that real communities are far from neutral.
Dynamical Systems On Networks
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Author : Mason Porter
language : en
Publisher: Springer
Release Date : 2016-03-31
Dynamical Systems On Networks written by Mason Porter and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-03-31 with Mathematics categories.
This volume is a tutorial for the study of dynamical systems on networks. It discusses both methodology and models, including spreading models for social and biological contagions. The authors focus especially on “simple” situations that are analytically tractable, because they are insightful and provide useful springboards for the study of more complicated scenarios. This tutorial, which also includes key pointers to the literature, should be helpful for junior and senior undergraduate students, graduate students, and researchers from mathematics, physics, and engineering who seek to study dynamical systems on networks but who may not have prior experience with graph theory or networks. Mason A. Porter is Professor of Nonlinear and Complex Systems at the Oxford Centre for Industrial and Applied Mathematics, Mathematical Institute, University of Oxford, UK. He is also a member of the CABDyN Complexity Centre and a Tutorial Fellow of Somerville College. James P. Gleeson is Professor of Industrial and Applied Mathematics, and co-Director of MACSI, at the University of Limerick, Ireland.
Modeling Methodologies And Tools For Molecular And Nano Scale Communications
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Author : Junichi Suzuki
language : en
Publisher: Springer
Release Date : 2017-03-15
Modeling Methodologies And Tools For Molecular And Nano Scale Communications written by Junichi Suzuki and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2017-03-15 with Technology & Engineering categories.
This book reports on cutting-edge modeling techniques, methodologies and tools used to understand, design and engineer nanoscale communication systems, such as molecular communication systems. Moreover, it includes introductory materials for those who are new to the field. The book’s interdisciplinary approach, which merges perspectives in computer science, the biological sciences and nanotechnology, will appeal to graduate students and researchers in these three areas.The book is organized into five parts, the first of which describes the fundamentals of molecular communication, including basic concepts, models and designs. In turn, the second part examines specific types of molecular communication found in biological systems, such as neuronal communication in the brain. The book continues by exploring further types of nanoscale communication, such as fluorescence resonance energy transfer and electromagnetic-based nanoscale communication, in the third part, and by describing nanomaterials and structures for practical applications in the fourth. Lastly, the book presents nanomedical applications such as targeted drug delivery and biomolecular sensing.
A Framework For Assessing Effects Of The Food System
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Author : National Research Council
language : en
Publisher: National Academies Press
Release Date : 2015-06-17
A Framework For Assessing Effects Of The Food System written by National Research Council and has been published by National Academies Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-06-17 with Medical categories.
How we produce and consume food has a bigger impact on Americans' well-being than any other human activity. The food industry is the largest sector of our economy; food touches everything from our health to the environment, climate change, economic inequality, and the federal budget. From the earliest developments of agriculture, a major goal has been to attain sufficient foods that provide the energy and the nutrients needed for a healthy, active life. Over time, food production, processing, marketing, and consumption have evolved and become highly complex. The challenges of improving the food system in the 21st century will require systemic approaches that take full account of social, economic, ecological, and evolutionary factors. Policy or business interventions involving a segment of the food system often have consequences beyond the original issue the intervention was meant to address. A Framework for Assessing Effects of the Food System develops an analytical framework for assessing effects associated with the ways in which food is grown, processed, distributed, marketed, retailed, and consumed in the United States. The framework will allow users to recognize effects across the full food system, consider all domains and dimensions of effects, account for systems dynamics and complexities, and choose appropriate methods for analysis. This report provides example applications of the framework based on complex questions that are currently under debate: consumption of a healthy and safe diet, food security, animal welfare, and preserving the environment and its resources. A Framework for Assessing Effects of the Food System describes the U.S. food system and provides a brief history of its evolution into the current system. This report identifies some of the real and potential implications of the current system in terms of its health, environmental, and socioeconomic effects along with a sense for the complexities of the system, potential metrics, and some of the data needs that are required to assess the effects. The overview of the food system and the framework described in this report will be an essential resource for decision makers, researchers, and others to examine the possible impacts of alternative policies or agricultural or food processing practices.
Simulation Of Complex Systems
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Author : Giovanni Volpe
language : en
Publisher: IOP Publishing Limited
Release Date : 2022-04-30
Simulation Of Complex Systems written by Giovanni Volpe and has been published by IOP Publishing Limited this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-04-30 with Science categories.
This book deals with the most fundamental and essential techniques to simulate complex systems, from the dynamics of molecules to the spreading of diseases, from optimization using ant colonies to the simulation of the Game of Life. Several natural systems found in physics, biology and engineering can be considered complex systems, because their behaviour is not easily predictable and is the result of complex interactions among their constituents. Examples of complex systems are a cell with its organelles, an organ, the human brain, social networks, transportation and communication systems, the stock market, ecosystems, systems with prey and predators, a swarm of bees. There are several specialized books focusing on different simulation methods, but there is not one fully devoted to complex systems. The "bottom-up" approach is innovative and allows the reader to conduct numerical experiments to explore the system's behaviour. Key Features: Composed of self-contained, independent chapters Illustrates simulation techniques in a broad range of fields from physics and biology to engineering, social science and economics Provides a hands-on approach with guided exercises Covers the fundamental numerical techniques in complex systems Ideal for self-study Contains supplementary example codes and video tutorials