Mastering Perl For Bioinformatics
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Mastering Perl For Bioinformatics
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Author : James Tisdall
language : en
Publisher: "O'Reilly Media, Inc."
Release Date : 2003-09-25
Mastering Perl For Bioinformatics written by James Tisdall and has been published by "O'Reilly Media, Inc." this book supported file pdf, txt, epub, kindle and other format this book has been release on 2003-09-25 with Computers categories.
Historically, programming hasn't been considered a critical skill for biologists. But now, with access to vast amounts of biological data contained in public databases, programming skills are increasingly in strong demand in biology research and development. Perl, with its highly developed capacities in string handling, text processing, networking, and rapid prototyping, has emerged as the programming language of choice for biological data analysis.Mastering Perl for Bioinformatics covers the core Perl language and many of its module extensions, presenting them in the context of biological data and problems of pressing interest to the biological community. This book, along with Beginning Perl for Bioinformatics, forms a basic course in Perl programming. This second volume finishes the basic Perl tutorial material (references, complex data structures, object-oriented programming, use of modules--all presented in a biological context) and presents some advanced topics of considerable interest in bioinformatics.The range of topics covered in Mastering Perl for Bioinformatics prepares the reader for enduring and emerging developments in critical areas of bioinformatics programming such as: Gene finding String alignment Methods of data storage and retrieval (SML and databases) Modeling of networks (graphs and Petri nets) Graphics (Tk) Parallelization Interfacing with other programming languages Statistics (PDL) Protein structure determination Biological models of computation (DNA Computers) Biologists and computer scientists who have conquered the basics of Perl and are ready to move even further in their mastery of this versatile language will appreciate the author's well-balanced approach to applying Perl's analytical abilities to the field of bioinformatics. Full of practical examples and real-world biological problem solving, this book is a must for any reader wanting to move beyond beginner level Perl in bioinformatics.
Beginning Perl For Bioinformatics
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Author : James Tisdall
language : en
Publisher: "O'Reilly Media, Inc."
Release Date : 2001
Beginning Perl For Bioinformatics written by James Tisdall and has been published by "O'Reilly Media, Inc." this book supported file pdf, txt, epub, kindle and other format this book has been release on 2001 with Computers categories.
This book shows biologists with little or no programming experience how to use Perl, the ideal language for biological data analysis. Each chapter focuses on solving a particular problem or class of problems, so you'll finish the book with the skills to tackle more advanced bioinformatics programming.
Mastering Perl For Bioinformatics
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Author : John Smith
language : en
Publisher: Independently Published
Release Date : 2024-04-27
Mastering Perl For Bioinformatics written by John Smith and has been published by Independently Published this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-04-27 with Computers categories.
"Mastering Perl for Bioinformatics" is an essential resource designed to equip researchers, professionals, and students with the Perl programming skills required to tackle the computational challenges of modern biology. Covering fundamental to advanced techniques, this book provides a detailed exploration of how Perl can be employed in the analysis of DNA and RNA, protein sequences, and genomic data, as well as in systems biology and bioinformatics algorithms. Through practical examples, tutorials, and case studies, readers will learn to handle vast biological datasets, develop their own bioinformatics tools, and perform complex analyses. Each chapter dives deep into different aspects of bioinformatics, from basic syntax to the integration of external tools and databases, ensuring that readers can progress from foundational techniques to sophisticated applications seamlessly. Whether you're starting out in computational biology or looking to enhance your data analysis skills, "Mastering Perl for Bioinformatics" offers the comprehensive and accessible guidance necessary to master the tools and methodologies of this crucial science. Gain the Perl expertise to advance your research and unlock new possibilities in biological discovery.
Mastering Python For Bioinformatics
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Author : Ken Youens-Clark
language : en
Publisher: "O'Reilly Media, Inc."
Release Date : 2021-05-05
Mastering Python For Bioinformatics written by Ken Youens-Clark and has been published by "O'Reilly Media, Inc." this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-05-05 with Computers categories.
Life scientists today urgently need training in bioinformatics skills. Too many bioinformatics programs are poorly written and barely maintained, usually by students and researchers who've never learned basic programming skills. This practical guide shows postdoc bioinformatics professionals and students how to exploit the best parts of Python to solve problems in biology while creating documented, tested, reproducible software. Ken Youens-Clark, author of Tiny Python Projects (Manning), demonstrates not only how to write effective Python code but also how to use tests to write and refactor scientific programs. You'll learn the latest Python features and tools including linters, formatters, type checkers, and tests to create documented and tested programs. You'll also tackle 14 challenges in Rosalind, a problem-solving platform for learning bioinformatics and programming. Create command-line Python programs to document and validate parameters Write tests to verify refactor programs and confirm they're correct Address bioinformatics ideas using Python data structures and modules such as Biopython Create reproducible shortcuts and workflows using makefiles Parse essential bioinformatics file formats such as FASTA and FASTQ Find patterns of text using regular expressions Use higher-order functions in Python like filter(), map(), and reduce()
Developing Bioinformatics Computer Skills
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Author : Cynthia Gibas
language : en
Publisher: "O'Reilly Media, Inc."
Release Date : 2001
Developing Bioinformatics Computer Skills written by Cynthia Gibas and has been published by "O'Reilly Media, Inc." this book supported file pdf, txt, epub, kindle and other format this book has been release on 2001 with Computers categories.
This practical, hands-on guide shows how to develop a structured approach to biological data and the tools needed to analyze it. It's aimed at scientists and students learning computational approaches to biological data, as well as experienced biology researchers starting to use computers to handle data.
Mastering Perl
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Author : brian d foy
language : en
Publisher: "O'Reilly Media, Inc."
Release Date : 2014-01-09
Mastering Perl written by brian d foy and has been published by "O'Reilly Media, Inc." this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-01-09 with Computers categories.
Take the next step toward Perl mastery with advanced concepts that make coding easier, maintenance simpler, and execution faster. Mastering Perl isn't a collection of clever tricks, but a way of thinking about Perl programming for solving debugging, configuration, and many other real-world problems you’ll encounter as a working programmer. The third in O’Reilly’s series of landmark Perl tutorials (after Learning Perl and Intermediate Perl), this fully upated edition pulls everything together and helps you bend Perl to your will. Explore advanced regular expressions features Avoid common problems when writing secure programs Profile and benchmark Perl programs to see where they need work Wrangle Perl code to make it more presentable and readable Understand how Perl keeps track of package variables Define subroutines on the fly Jury-rig modules to fix code without editing the original source Use bit operations and bit vectors to store large data efficiently Learn how to detect errors that Perl doesn’t report Dive into logging, data persistence, and the magic of tied variables
Bioinformatics Programming Using Python
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Author : Mitchell L Model
language : en
Publisher: "O'Reilly Media, Inc."
Release Date : 2009-12-08
Bioinformatics Programming Using Python written by Mitchell L Model and has been published by "O'Reilly Media, Inc." this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009-12-08 with Science categories.
Powerful, flexible, and easy to use, Python is an ideal language for building software tools and applications for life science research and development. This unique book shows you how to program with Python, using code examples taken directly from bioinformatics. In a short time, you'll be using sophisticated techniques and Python modules that are particularly effective for bioinformatics programming. Bioinformatics Programming Using Python is perfect for anyone involved with bioinformatics -- researchers, support staff, students, and software developers interested in writing bioinformatics applications. You'll find it useful whether you already use Python, write code in another language, or have no programming experience at all. It's an excellent self-instruction tool, as well as a handy reference when facing the challenges of real-life programming tasks. Become familiar with Python's fundamentals, including ways to develop simple applications Learn how to use Python modules for pattern matching, structured text processing, online data retrieval, and database access Discover generalized patterns that cover a large proportion of how Python code is used in bioinformatics Learn how to apply the principles and techniques of object-oriented programming Benefit from the "tips and traps" section in each chapter
Computational Biology
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Author : Röbbe Wünschiers
language : en
Publisher: Springer Science & Business Media
Release Date : 2012-12-06
Computational Biology written by Röbbe Wünschiers and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2012-12-06 with Science categories.
-Teaches the reader how to use Unix, which is the key to basic computing and allows the most flexibility for bioinformatics applications -Written specifically with the needs of molecular biologists in mind -Easy to follow, written for beginners with no computational knowledge -Includes examples from biological data analysis -Can be use either for self-teaching or in courses
Exploring Bioinformatics
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Author : Caroline St. Clair
language : en
Publisher: Jones & Bartlett Publishers
Release Date : 2013-12-12
Exploring Bioinformatics written by Caroline St. Clair and has been published by Jones & Bartlett Publishers this book supported file pdf, txt, epub, kindle and other format this book has been release on 2013-12-12 with Computers categories.
Thoroughly revised and updated, Exploring Bioinformatics: A Project-Based Approach, Second Edition is intended for an introductory course in bioinformatics at the undergraduate level. Through hands-on projects, students are introduced to current biological problems and then explore and develop bioinformatic solutions to these issues. Each chapter presents a key problem, provides basic biological concepts, introduces computational techniques to address the problem, and guides students through the use of existing web-based tools and software solutions. This progression prepares students to tackle the On-Your-Own Project, where they develop their own software solutions. Topics such as antibiotic resistance, genetic disease, and genome sequencing provide context and relevance to capture student interest.