Modeling Neural Circuits Made Simple With Python
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Modeling Neural Circuits Made Simple With Python
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Author : Robert Rosenbaum
language : en
Publisher: MIT Press
Release Date : 2024-03-19
Modeling Neural Circuits Made Simple With Python written by Robert Rosenbaum and has been published by MIT Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-03-19 with Science categories.
An accessible undergraduate textbook in computational neuroscience that provides an introduction to the mathematical and computational modeling of neurons and networks of neurons. Understanding the brain is a major frontier of modern science. Given the complexity of neural circuits, advancing that understanding requires mathematical and computational approaches. This accessible undergraduate textbook in computational neuroscience provides an introduction to the mathematical and computational modeling of neurons and networks of neurons. Starting with the biophysics of single neurons, Robert Rosenbaum incrementally builds to explanations of neural coding, learning, and the relationship between biological and artificial neural networks. Examples with real neural data demonstrate how computational models can be used to understand phenomena observed in neural recordings. Based on years of classroom experience, the material has been carefully streamlined to provide all the content needed to build a foundation for modeling neural circuits in a one-semester course. Proven in the classroom Example-rich, student-friendly approach Includes Python code and a mathematical appendix reviewing the requisite background in calculus, linear algebra, and probability Ideal for engineering, science, and mathematics majors and for self-study
Modeling Neural Circuits Made Simple With Python
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Author : Robert Rosenbaum
language : en
Publisher: MIT Press
Release Date : 2024-03-19
Modeling Neural Circuits Made Simple With Python written by Robert Rosenbaum and has been published by MIT Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-03-19 with Science categories.
An accessible undergraduate textbook in computational neuroscience that provides an introduction to the mathematical and computational modeling of neurons and networks of neurons. Understanding the brain is a major frontier of modern science. Given the complexity of neural circuits, advancing that understanding requires mathematical and computational approaches. This accessible undergraduate textbook in computational neuroscience provides an introduction to the mathematical and computational modeling of neurons and networks of neurons. Starting with the biophysics of single neurons, Robert Rosenbaum incrementally builds to explanations of neural coding, learning, and the relationship between biological and artificial neural networks. Examples with real neural data demonstrate how computational models can be used to understand phenomena observed in neural recordings. Based on years of classroom experience, the material has been carefully streamlined to provide all the content needed to build a foundation for modeling neural circuits in a one-semester course. Proven in the classroom Example-rich, student-friendly approach Includes Python code and a mathematical appendix reviewing the requisite background in calculus, linear algebra, and probability Ideal for engineering, science, and mathematics majors and for self-study
An Introductory Course In Computational Neuroscience
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Author : Paul Miller
language : en
Publisher: MIT Press
Release Date : 2018-10-02
An Introductory Course In Computational Neuroscience written by Paul Miller and has been published by MIT Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-10-02 with Science categories.
A textbook for students with limited background in mathematics and computer coding, emphasizing computer tutorials that guide readers in producing models of neural behavior. This introductory text teaches students to understand, simulate, and analyze the complex behaviors of individual neurons and brain circuits. It is built around computer tutorials that guide students in producing models of neural behavior, with the associated Matlab code freely available online. From these models students learn how individual neurons function and how, when connected, neurons cooperate in a circuit. The book demonstrates through simulated models how oscillations, multistability, post-stimulus rebounds, and chaos can arise within either single neurons or circuits, and it explores their roles in the brain. The book first presents essential background in neuroscience, physics, mathematics, and Matlab, with explanations illustrated by many example problems. Subsequent chapters cover the neuron and spike production; single spike trains and the underlying cognitive processes; conductance-based models; the simulation of synaptic connections; firing-rate models of large-scale circuit operation; dynamical systems and their components; synaptic plasticity; and techniques for analysis of neuron population datasets, including principal components analysis, hidden Markov modeling, and Bayesian decoding. Accessible to undergraduates in life sciences with limited background in mathematics and computer coding, the book can be used in a “flipped” or “inverted” teaching approach, with class time devoted to hands-on work on the computer tutorials. It can also be a resource for graduate students in the life sciences who wish to gain computing skills and a deeper knowledge of neural function and neural circuits.
Biophysics Of Computation
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Author : Christof Koch
language : en
Publisher: Oxford University Press
Release Date : 2004-10-28
Biophysics Of Computation written by Christof Koch and has been published by Oxford University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2004-10-28 with Medical categories.
Neural network research often builds on the fiction that neurons are simple linear threshold units, completely neglecting the highly dynamic and complex nature of synapses, dendrites, and voltage-dependent ionic currents. Biophysics of Computation: Information Processing in Single Neurons challenges this notion, using richly detailed experimental and theoretical findings from cellular biophysics to explain the repertoire of computational functions available to single neurons. The author shows how individual nerve cells can multiply, integrate, or delay synaptic inputs and how information can be encoded in the voltage across the membrane, in the intracellular calcium concentration, or in the timing of individual spikes.Key topics covered include the linear cable equation; cable theory as applied to passive dendritic trees and dendritic spines; chemical and electrical synapses and how to treat them from a computational point of view; nonlinear interactions of synaptic input in passive and active dendritic trees; the Hodgkin-Huxley model of action potential generation and propagation; phase space analysis; linking stochastic ionic channels to membrane-dependent currents; calcium and potassium currents and their role in information processing; the role of diffusion, buffering and binding of calcium, and other messenger systems in information processing and storage; short- and long-term models of synaptic plasticity; simplified models of single cells; stochastic aspects of neuronal firing; the nature of the neuronal code; and unconventional models of sub-cellular computation.Biophysics of Computation: Information Processing in Single Neurons serves as an ideal text for advanced undergraduate and graduate courses in cellular biophysics, computational neuroscience, and neural networks, and will appeal to students and professionals in neuroscience, electrical and computer engineering, and physics.
From Neuron To Cognition Via Computational Neuroscience
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Author : Michael A. Arbib
language : en
Publisher: MIT Press
Release Date : 2016-11-04
From Neuron To Cognition Via Computational Neuroscience written by Michael A. Arbib and has been published by MIT Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-11-04 with Science categories.
A comprehensive, integrated, and accessible textbook presenting core neuroscientific topics from a computational perspective, tracing a path from cells and circuits to behavior and cognition. This textbook presents a wide range of subjects in neuroscience from a computational perspective. It offers a comprehensive, integrated introduction to core topics, using computational tools to trace a path from neurons and circuits to behavior and cognition. Moreover, the chapters show how computational neuroscience—methods for modeling the causal interactions underlying neural systems—complements empirical research in advancing the understanding of brain and behavior. The chapters—all by leaders in the field, and carefully integrated by the editors—cover such subjects as action and motor control; neuroplasticity, neuromodulation, and reinforcement learning; vision; and language—the core of human cognition. The book can be used for advanced undergraduate or graduate level courses. It presents all necessary background in neuroscience beyond basic facts about neurons and synapses and general ideas about the structure and function of the human brain. Students should be familiar with differential equations and probability theory, and be able to pick up the basics of programming in MATLAB and/or Python. Slides, exercises, and other ancillary materials are freely available online, and many of the models described in the chapters are documented in the brain operation database, BODB (which is also described in a book chapter). Contributors Michael A. Arbib, Joseph Ayers, James Bednar, Andrej Bicanski, James J. Bonaiuto, Nicolas Brunel, Jean-Marie Cabelguen, Carmen Canavier, Angelo Cangelosi, Richard P. Cooper, Carlos R. Cortes, Nathaniel Daw, Paul Dean, Peter Ford Dominey, Pierre Enel, Jean-Marc Fellous, Stefano Fusi, Wulfram Gerstner, Frank Grasso, Jacqueline A. Griego, Ziad M. Hafed, Michael E. Hasselmo, Auke Ijspeert, Stephanie Jones, Daniel Kersten, Jeremie Knuesel, Owen Lewis, William W. Lytton, Tomaso Poggio, John Porrill, Tony J. Prescott, John Rinzel, Edmund Rolls, Jonathan Rubin, Nicolas Schweighofer, Mohamed A. Sherif, Malle A. Tagamets, Paul F. M. J. Verschure, Nathan Vierling-Claasen, Xiao-Jing Wang, Christopher Williams, Ransom Winder, Alan L. Yuille
Dynamical Systems In Neuroscience
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Author : Eugene M. Izhikevich
language : en
Publisher: MIT Press
Release Date : 2007
Dynamical Systems In Neuroscience written by Eugene M. Izhikevich and has been published by MIT Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2007 with Differentiable dynamical systems categories.
In order to model neuronal behavior or to interpret the results of modeling studies, neuroscientists must call upon methods of nonlinear dynamics. This book offers an introduction to nonlinear dynamical systems theory for researchers and graduate students in neuroscience. It also provides an overview of neuroscience for mathematicians who want to learn the basic facts of electrophysiology. Dynamical Systems in Neuroscience presents a systematic study of the relationship of electrophysiology, nonlinear dynamics, and computational properties of neurons. It emphasizes that information processing in the brain depends not only on the electrophysiological properties of neurons but also on their dynamical properties. The book introduces dynamical systems, starting with one- and two-dimensional Hodgkin-Huxley-type models and continuing to a description of bursting systems. Each chapter proceeds from the simple to the complex, and provides sample problems at the end. The book explains all necessary mathematical concepts using geometrical intuition; it includes many figures and few equations, making it especially suitable for non-mathematicians. Each concept is presented in terms of both neuroscience and mathematics, providing a link between the two disciplines. Nonlinear dynamical systems theory is at the core of computational neuroscience research, but it is not a standard part of the graduate neuroscience curriculum—or taught by math or physics department in a way that is suitable for students of biology. This book offers neuroscience students and researchers a comprehensive account of concepts and methods increasingly used in computational neuroscience. An additional chapter on synchronization, with more advanced material, can be found at the author's website, www.izhikevich.com.
Memristor And Memristive Neural Networks
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Author : Alex James
language : en
Publisher: BoD – Books on Demand
Release Date : 2018-04-04
Memristor And Memristive Neural Networks written by Alex James and has been published by BoD – Books on Demand this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-04-04 with Computers categories.
This book covers a range of models, circuits and systems built with memristor devices and networks in applications to neural networks. It is divided into three parts: (1) Devices, (2) Models and (3) Applications. The resistive switching property is an important aspect of the memristors, and there are several designs of this discussed in this book, such as in metal oxide/organic semiconductor nonvolatile memories, nanoscale switching and degradation of resistive random access memory and graphene oxide-based memristor. The modelling of the memristors is required to ensure that the devices can be put to use and improve emerging application. In this book, various memristor models are discussed, from a mathematical framework to implementations in SPICE and verilog, that will be useful for the practitioners and researchers to get a grounding on the topic. The applications of the memristor models in various neuromorphic networks are discussed covering various neural network models, implementations in A/D converter and hierarchical temporal memories.
Gene Regulation And Metabolism
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Author : Julio Collado-Vides
language : en
Publisher: MIT Press
Release Date : 2002
Gene Regulation And Metabolism written by Julio Collado-Vides and has been published by MIT Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2002 with Computers categories.
An overview of current computational approaches to metabolism and gene regulation.
Python In Neuroscience
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Author : Eilif Muller
language : en
Publisher: Frontiers Media SA
Release Date : 2015-07-23
Python In Neuroscience written by Eilif Muller and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-07-23 with Neurosciences. Biological psychiatry. Neuropsychiatry categories.
Python is rapidly becoming the de facto standard language for systems integration. Python has a large user and developer-base external to theneuroscience community, and a vast module library that facilitates rapid and maintainable development of complex and intricate systems. In this Research Topic, we highlight recent efforts to develop Python modules for the domain of neuroscience software and neuroinformatics: - simulators and simulator interfaces - data collection and analysis - sharing, re-use, storage and databasing of models and data - stimulus generation - parameter search and optimization - visualization - VLSI hardware interfacing. Moreover, we seek to provide a representative overview of existing mature Python modules for neuroscience and neuroinformatics, to demonstrate a critical mass and show that Python is an appropriate choice of interpreter interface for future neuroscience software development.
Principles Of Neural Design
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Author : Peter Sterling
language : en
Publisher: MIT Press
Release Date : 2015-05-22
Principles Of Neural Design written by Peter Sterling and has been published by MIT Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-05-22 with Education categories.
Neuroscience research has exploded, with more than fifty thousand neuroscientists applying increasingly advanced methods. A mountain of new facts and mechanisms has emerged. And yet a principled framework to organize this knowledge has been missing. In this book, Peter Sterling and Simon Laughlin, two leading neuroscientists, strive to fill this gap, outlining a set of organizing principles to explain the whys of neural design that allow the brain to compute so efficiently. Setting out to "reverse engineer" the brain -- disassembling it to understand it -- Sterling and Laughlin first consider why an animal should need a brain, tracing computational abilities from bacterium to protozoan to worm. They examine bigger brains and the advantages of "anticipatory regulation"; identify constraints on neural design and the need to "nanofy"; and demonstrate the routes to efficiency in an integrated molecular system, phototransduction. They show that the principles of neural design at finer scales and lower levels apply at larger scales and higher levels; describe neural wiring efficiency; and discuss learning as a principle of biological design that includes "save only what is needed." Sterling and Laughlin avoid speculation about how the brain might work and endeavor to make sense of what is already known. Their distinctive contribution is to gather a coherent set of basic rules and exemplify them across spatial and functional scales.