Protein Function Prediction For Omics Era
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Protein Function Prediction For Omics Era
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Author : Daisuke Kihara
language : en
Publisher: Springer Science & Business Media
Release Date : 2011-04-19
Protein Function Prediction For Omics Era written by Daisuke Kihara and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2011-04-19 with Medical categories.
Gene function annotation has been a central question in molecular biology. The importance of computational function prediction is increasing because more and more large scale biological data, including genome sequences, protein structures, protein-protein interaction data, microarray expression data, and mass spectrometry data, are awaiting biological interpretation. Traditionally when a genome is sequenced, function annotation of genes is done by homology search methods, such as BLAST or FASTA. However, since these methods are developed before the genomics era, conventional use of them is not necessarily most suitable for analyzing a large scale data. Therefore we observe emerging development of computational gene function prediction methods, which are targeted to analyze large scale data, and also those which use such omics data as additional source of function prediction. In this book, we overview this emerging exciting field. The authors have been selected from 1) those who develop novel purely computational methods 2) those who develop function prediction methods which use omics data 3) those who maintain and update data base of function annotation of particular model organisms (E. coli), which are frequently referred
Analyzing Network Data In Biology And Medicine
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Author : Nataša Pržulj
language : en
Publisher: Cambridge University Press
Release Date : 2019-03-28
Analyzing Network Data In Biology And Medicine written by Nataša Pržulj and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2019-03-28 with Language Arts & Disciplines categories.
Introduces biological concepts and biotechnologies producing the data, graph and network theory, cluster analysis and machine learning, using real-world biological and medical examples.
Biological Knowledge Discovery Handbook
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Author : Mourad Elloumi
language : en
Publisher: John Wiley & Sons
Release Date : 2015-02-04
Biological Knowledge Discovery Handbook written by Mourad Elloumi and has been published by John Wiley & Sons this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-02-04 with Computers categories.
The first comprehensive overview of preprocessing, mining, and postprocessing of biological data Molecular biology is undergoing exponential growth in both the volume and complexity of biological data and knowledge discovery offers the capacity to automate complex search and data analysis tasks. This book presents a vast overview of the most recent developments on techniques and approaches in the field of biological knowledge discovery and data mining (KDD) providing in-depth fundamental and technical field information on the most important topics encountered. Written by top experts, Biological Knowledge Discovery Handbook: Preprocessing, Mining, and Postprocessing of Biological Data covers the three main phases of knowledge discovery (data preprocessing, data processing also known as data mining and data postprocessing) and analyzes both verification systems and discovery systems. BIOLOGICAL DATA PREPROCESSING Part A: Biological Data Management Part B: Biological Data Modeling Part C: Biological Feature Extraction Part D Biological Feature Selection BIOLOGICAL DATA MINING Part E: Regression Analysis of Biological Data Part F Biological Data Clustering Part G: Biological Data Classification Part H: Association Rules Learning from Biological Data Part I: Text Mining and Application to Biological Data Part J: High-Performance Computing for Biological Data Mining Combining sound theory with practical applications in molecular biology, Biological Knowledge Discovery Handbook is ideal for courses in bioinformatics and biological KDD as well as for practitioners and professional researchers in computer science, life science, and mathematics.
Bioinformatics In Veterinary Science
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Author : Jun-Mo Kim
language : en
Publisher: Springer Nature
Release Date : 2025-01-31
Bioinformatics In Veterinary Science written by Jun-Mo Kim and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2025-01-31 with Science categories.
This book presents a compendium of advanced research and basic principles/approaches related to vetinformatics. All chapters have explored the role of basic methods of vetinformatics that may be very helpful for students and researchers studying/working in the area of veterinary and animal science and may also serve the purpose of textbook. The latest developments in the field are discussed, and basic concepts are introduced in a simple but comprehensive way to ensure that students/researchers are able to understand the more advanced study in the proposed field. It also provides a comprehensive list of resources used for RNAseq data analysis, metagenomics, GWAS, systems biology and multiomics integration, molecular docking, toxicity prediction, QSAR, molecular dynamics simulation, vaccine designing, and machine learning. This book serves as an invaluable resource for researchers, faculty, and students of veterinary and animal sciences for understanding modern approaches and the application of vetinformatics involved in livestock research. This also focuses to guide map and carry out studies and research in the field of vetinformatics.
Soft Computing For Biological Systems
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Author : Hemant J. Purohit
language : en
Publisher: Springer
Release Date : 2018-02-19
Soft Computing For Biological Systems written by Hemant J. Purohit and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-02-19 with Science categories.
This book explains how the biological systems and their functions are driven by genetic information stored in the DNA, and their expression driven by different factors. The soft computing approach recognizes the different patterns in DNA sequence and try to assign the biological relevance with available information.The book also focuses on using the soft-computing approach to predict protein-protein interactions, gene expression and networks. The insights from these studies can be used in metagenomic data analysis and predicting artificial neural networks.
Machine Learning Methodologies To Study Molecular Interactions
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Author : Elif Ozkirimli
language : en
Publisher: Frontiers Media SA
Release Date : 2022-01-21
Machine Learning Methodologies To Study Molecular Interactions written by Elif Ozkirimli and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-01-21 with Science categories.
Dr. Elif Ozkirimli is a full time employee of F. Hoffmann-La Roche AG, Switzerland and Dr. Artur Yakimovich is a full time employee of Roche Products Limited, UK. All other Topic Editors declare no competing interests with regards to the Research Topic.
Extracellular Matrix Omics
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Author : Sylvie Ricard-Blum
language : en
Publisher: Springer Nature
Release Date : 2020-12-15
Extracellular Matrix Omics written by Sylvie Ricard-Blum and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-12-15 with Science categories.
This book covers different omics aspects related to the extracellular matrix (ECM), namely specific omics resources focused on the extracellular matrix (e.g., databases, repositories and atlases), quantitative proteomics applied to specific extracellular matrices (e.g. basement membranes), biological processes such as ECM degradation (degradomics), cell-matrix interactions (adhesomes), signaling pathways, biomarker discovery and diseases, and interactomics (extracellular matrix interaction networks including not only protein-protein but also protein-glycosaminoglycan interactions). The volume also includes recent advances in glycomics and glycobioinformatics applied to proteoglycans and glycosaminoglycans, which are key biological players. The use of omics data to build dynamic models of ECM-regulated biological pathways is addressed, together with the requirement to standardize omic data, which is a prerequisite for the FAIR (Findability, Accessibility, Interoperability, and Reusability) guiding principles for scientific data management. This book will be of great interest to a broad readership from beginners to advanced researchers, who are interested in extracellular matrix omics and will inspire future research topics.
Bioinformatics For Plant Research And Crop Breeding
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Author : Jen-Tsung Chen
language : en
Publisher: John Wiley & Sons
Release Date : 2024-10-28
Bioinformatics For Plant Research And Crop Breeding written by Jen-Tsung Chen and has been published by John Wiley & Sons this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-10-28 with Science categories.
Explore and advance bioinformatics and systems biology tools for crop breeding programs in this practical resource for researchers Plant biology and crop breeding have produced an immense amount of data in recent years, from genomics to interactome and beyond. Bioinformatics tools, which aim at analyzing the vast quantities of data produced by biological research and processes, have developed at a rapid pace to meet the challenges of this vast data trove. The resulting field of bioinformatics and systems biology is producing increasingly rich and transformative research. Bioinformatics for Plant Research and Crop Breeding offers an overview of this field, its recent advances, and its wider applications. Drawing on a range of analytical and data-science tools, its foundation on an in-silico platform acquired multi-omics makes it indispensable for scientists and researchers alike. It promises to become ever more relevant as new techniques for generating and organizing data continue to transform the field. Bioinformatics for Plant Research and Crop Breeding readers will also find: A focus on emerging trends in plant science, sustainable agriculture, and global food security Detailed discussion of topics including plant diversity, plant stresses, nanotechnology in agriculture, and many others Applications incorporating artificial intelligence, machine learning, deep learning and more Bioinformatics for Plant Research and Crop Breeding is ideal for researchers and scientists interested in the potential of OMICs, and bioinformatic tools to aid and develop crop improvement programs.
Giardia And Giardiasis
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Author : M.Guadalupe Ortega-Pierres
language : en
Publisher: Academic Press
Release Date : 2019-10-14
Giardia And Giardiasis written by M.Guadalupe Ortega-Pierres and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2019-10-14 with Medical categories.
Giardia and Giardiasis, Volume 106 in Advances in Parasitology series includes in the first part aspects of molecular and cellular biology of Giardia and the role of particular molecules or molecular groups in essential functions and/or trafficking in the parasite. These approaches are with the aim to explore how this parasite adapts to an ever-changing environment both within and outside of the host animal. Subsequently a comprehensive description of virulence factors secreted by Giardia, are reviewed on their cytotoxic mechanisms and roles in the pathophysiology of giardiasis, and also a description on the potential of these secreted molecules as targets for drugs is included. In the context of the immuno-pathogenesis of giardiasis a review on the data and information on innate and adaptive immunity to Giardia, is included as well as a discussion on how improved knowledge of immunity is advancing our understanding of the pathogenesis and clinical outcomes of giardiasis. The final part of this volume includes a review of the epidemiology of giardiasis in a veterinary context using molecular tools together with a discussion of the current status of the species and assemblages of Giardia, and issues surrounding the assignment of host specificity and the zoonotic potential using current molecular markers. - Informs and updates on all the latest developments in the field of parasitology - Includes medical studies of parasites of major influence - Features reviews of more traditional areas, such as zoology, taxonomy, and life history, which help to shape current thinking and applications
Frontiers Of Computational Science
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Author : Yukio Kaneda
language : en
Publisher: Springer Science & Business Media
Release Date : 2007-04-10
Frontiers Of Computational Science written by Yukio Kaneda and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2007-04-10 with Technology & Engineering categories.
This book covers the wide-ranging scientific areas of computational science, from basic research fields such as algorithms and soft-computing to diverse applied fields targeting macro, micro, nano, genome and complex systems. It presents the proceedings of the International Symposium on Frontiers of Computational Science 2005, held in Nagoya in December 2005.