Refining Phylogenetic Analyses
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Refining Phylogenetic Analyses
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Author : Pablo A. Goloboff
language : en
Publisher: CRC Press
Release Date : 2022-07-22
Refining Phylogenetic Analyses written by Pablo A. Goloboff and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-07-22 with Science categories.
This volume discusses the aspects of a phylogenetic analysis that go beyond basic calculation of most parsimonious trees. Practical application of all principles discussed is illustrated by reference to TNT, a freely available software package that can perform all the steps needed in a phylogenetic analysis. The first problem considered is how to summarize and compare multiple trees (including identification and handling wildcard taxa). Evaluation of the strength of support for groups, another critical component of any phylogenetic analysis, is given careful consideration. The different interpretations of measures of support are discussed and connected with alternative implementations. The book reviews rationales for estimating character reliability on the basis of homoplasy, with particular attention to morphological characters. The main methods for character weighting and their practical implementation, several of them unique to TNT, are discussed ad libitum. Also unique to TNT is the ability to directly analyze morphometric data (including landmarks), on the same footing as discrete characters. Finally, the scripting language of TNT is introduced. With scripting, it is possible to "program" TNT to create personalized routines and automate complex calculations, taking analyses to the next level and allowing exploration of new methods and ideas. Key Features Discusses the treatment of ambiguity in phylogenetic analyses in depth, for summarizing results or comparing trees Reviews literature on arguments and methods for weighting morphological characters and their practical application Describes theory and application of methods for evaluating strength of group support, based on either resampling or comparisons with suboptimal trees Discusses the use of morphometric characters in phylogenetic analysis Presents extensive information on commands and options of the TNT computer program, including the use and creation of scripts
Refining Phylogenetic Analyses
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Author : Pablo A. Goloboff
language : en
Publisher: CRC Press
Release Date : 2022-07-22
Refining Phylogenetic Analyses written by Pablo A. Goloboff and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-07-22 with Science categories.
This volume discusses the aspects of a phylogenetic analysis that go beyond basic calculation of most parsimonious trees. Practical application of all principles discussed is illustrated by reference to TNT, a freely available software package that can perform all the steps needed in a phylogenetic analysis. The first problem considered is how to summarize and compare multiple trees (including identification and handling wildcard taxa). Evaluation of the strength of support for groups, another critical component of any phylogenetic analysis, is given careful consideration. The different interpretations of measures of support are discussed and connected with alternative implementations. The book reviews rationales for estimating character reliability on the basis of homoplasy, with particular attention to morphological characters. The main methods for character weighting and their practical implementation, several of them unique to TNT, are discussed ad libitum. Also unique to TNT is the ability to directly analyze morphometric data (including landmarks), on the same footing as discrete characters. Finally, the scripting language of TNT is introduced. With scripting, it is possible to "program" TNT to create personalized routines and automate complex calculations, taking analyses to the next level and allowing exploration of new methods and ideas. Key Features Discusses the treatment of ambiguity in phylogenetic analyses in depth, for summarizing results or comparing trees Reviews literature on arguments and methods for weighting morphological characters and their practical application Describes theory and application of methods for evaluating strength of group support, based on either resampling or comparisons with suboptimal trees Discusses the use of morphometric characters in phylogenetic analysis Presents extensive information on commands and options of the TNT computer program, including the use and creation of scripts
The Phylogenetic Handbook
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Author : Marco Salemi
language : en
Publisher: Cambridge University Press
Release Date : 2009-03-26
The Phylogenetic Handbook written by Marco Salemi and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009-03-26 with Science categories.
A broad, hands on guide with detailed explanations of current methodology, relevant exercises and popular software tools.
Modern Phylogenetic Comparative Methods And Their Application In Evolutionary Biology
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Author : László Zsolt Garamszegi
language : en
Publisher:
Release Date : 2014-08-31
Modern Phylogenetic Comparative Methods And Their Application In Evolutionary Biology written by László Zsolt Garamszegi and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-08-31 with categories.
Leishmaniasis
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Author : David Claborn
language : en
Publisher: BoD – Books on Demand
Release Date : 2014-03-19
Leishmaniasis written by David Claborn and has been published by BoD – Books on Demand this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-03-19 with Medical categories.
Of all the parasitic diseases, leishmaniasis is one of the most diverse, with a variety of manifestations, from relatively minor cutaneous lesions to deadly visceral infections. It is also widespread, causing human disease in the Americas, Asia, Europe and Africa. The environments in which this disease occurs range from desert to tropical jungle to urban habitats. Not surprisingly, the literature on this disease is written in a variety of languages including Portuguese, Arabic, English and French among others. This book provides a synopsis in English of much of the recent research on leishmaniasis, with a focus on the epidemiology, diagnosis and treatment of the disease as described by researchers around the world, but with a focus on the research from Brazil and the Middle East.
Phylogenomics
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Author : Rob DeSalle
language : en
Publisher: CRC Press
Release Date : 2020-08-18
Phylogenomics written by Rob DeSalle and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-08-18 with Computers categories.
Phylogenomics: A Primer, Second Edition is for advanced undergraduate and graduate biology students studying molecular biology, comparative biology, evolution, genomics, and biodiversity. This book explains the essential concepts underlying the storage and manipulation of genomics level data, construction of phylogenetic trees, population genetics, natural selection, the tree of life, DNA barcoding, and metagenomics. The inclusion of problem-solving exercises in each chapter provides students with a solid grasp of the important molecular and evolutionary questions facing modern biologists as well as the tools needed to answer them.
New Perspectives On Horned Dinosaurs
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Author : Michael J. Ryan
language : en
Publisher: Indiana University Press
Release Date : 2010
New Perspectives On Horned Dinosaurs written by Michael J. Ryan and has been published by Indiana University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2010 with Nature categories.
Easily distinguished by the horns and frills on their skulls, ceratopsians were one of the most successful of all dinosaurs. This volume presents a broad range of cutting-edge research on the functional biology, behavior, systematics, paleoecology, and paleogeography of the horned dinosaurs, and includes descriptions of newly identified species.
Genetics And Genomics Of Pineapple
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Author : Ray Ming
language : en
Publisher: Springer
Release Date : 2018-11-27
Genetics And Genomics Of Pineapple written by Ray Ming and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-11-27 with Science categories.
This book is the first comprehensive volume on the genetics and genomics of pineapple and provides an overview of the current state of pineapple research. Pineapple [Ananas comosus (L.) Merr.] is the second most important tropical fruit after banana in term of international trade. Its features are advantageous for genomic research: it has a small genome of 527 Mb which is diploid and vegetatively propagated; it is monocot, closely related to the grass family that includes major cereal crops, wheat, rice, corn, sorghum, and millet; and it serves as an out group for genetic and genomic research in grasses. In addition to exploring the evolution and improvement of pineapple, this work examines the pineapple genome with respect to genome structure and organization, comparative analyses with other angiosperm genomes, transcription factors, disease resistance, and circadian clock regulation of CAM related genes. With chapters covering botanical, genetic, genomic, and applied aspects of pineapple, this text also encourages the application of genomic technologies and suggests future prospects.
Evolution And Fossil Record Of African Proboscidea
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Author : William J. Sanders
language : en
Publisher: CRC Press
Release Date : 2023-09-15
Evolution And Fossil Record Of African Proboscidea written by William J. Sanders and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-09-15 with Medical categories.
This book details the long, diverse, and complex phylogenetic history of elephants and their fossil relatives (the Proboscidea), whose origin is deeply embedded some 60 million years ago in Africa. Most of the major evolutionary events of proboscideans occurred in Africa, and these are examined in their geological, paleoecological, geographic, and faunal contexts. Updated information about feeding adaptations, taxonomy and systematics, genetics, and site occurrences is included and summarized in tables, figures, and charts. This is the first comprehensive review of African proboscideans and illustrates the need to more actively protect elephants and ensure their survival in modern ecosystems. Key Features: Provides a comprehensive systematic review of the African proboscidean fossil record Includes a summary of taxonomy, geochronology, biogeography and morphology Documents major faunal events including those associated with hominin origins Synthesizes new data from genomic, isotopic, and microware analyses Emphasizes the role of elephants in ecosystems and the importance of conservation
The Mexican Transition Zone
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Author : Juan J. Morrone
language : en
Publisher: Springer Nature
Release Date : 2020-07-02
The Mexican Transition Zone written by Juan J. Morrone and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-07-02 with Science categories.
This book presents an evolutionary biogeographic analysis of the Mexican Transition Zone, which is situated in the overlap of the Nearctic and Neotropical regions. It includes a comprehensive review of previous track, cladistic and molecular biogeographic analyses and is illustrated with full color maps and vegetation photographs of the respective areas covered. Given its scope, the book will be of interest to students and researchers whose work involves systematic and biogeographic analyses of plant and animal taxa of the Mexican Transition Zone or other transition zones of the world, and to ecologists working in biodiversity conservation, who will be able to appreciate the evolutionary relevance of the Mexican Transition Zone for establishing conservation areas..