Reticulate Evolution

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Reticulate Evolution

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Author : Nathalie Gontier
language : en
Publisher: Springer
Release Date : 2015-07-09

Reticulate Evolution written by Nathalie Gontier and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-07-09 with Science categories.

Written for non-experts, this volume introduces the mechanisms that underlie reticulate evolution. Chapters are either accompanied with glossaries that explain new terminology or timelines that position pioneering scholars and their major discoveries in their historical contexts. The contributing authors outline the history and original context of discovery of symbiosis, symbiogenesis, lateral gene transfer, hybridization or divergence with gene flow and infectious heredity. By applying key insights from the areas of molecular (phylo)genetics, microbiology, virology, ecology, systematics, immunology, epidemiology and computational science, they demonstrate how reticulate evolution impacts successful survival, fitness and speciation. Reticulate evolution brings forth a challenge to the standard Neo-Darwinian framework, which defines life as the outcome of bifurcation and ramification patterns brought forth by the vertical mechanism of natural selection. Reticulate evolution puts forward a pattern in the tree of life that is characterized by horizontal mergings and lineage crossings induced by symbiosis, symbiogenesis, lateral gene transfer, hybridization or divergence with gene flow and infective heredity, making the “tree of life” look more like a “web of life.” On an epistemological level, the various means by which hereditary material can be transferred horizontally challenges our classic notions of units and levels of evolution, fitness, modes of transmission, linearity, communities and biological individuality. The case studies presented examine topics including the origin of the eukaryotic cell and its organelles through symbiogenesis; the origin of algae through primary and secondary symbiosis and dinoflagellates through tertiary symbiosis; the superorganism and holobiont as units of evolution; how endosymbiosis induces speciation in multicellular life forms; transferrable and non-transferrable plasmids and how they symbiotically interact with their host; the means by which pro- and eukaryotic organisms transfer genes laterally (bacterial transformation, transduction and conjugation as well as transposons and other mobile genetic elements); hybridization and divergence with gene flow in sexually-reproducing individuals; current (human) microbiome and viriome studies that impact our knowledge concerning the evolution of organismal health and acquired immunity; and how symbiosis and symbiogenesis can be modelled in computational evolution.

Reticulate Evolution And Humans

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Author : Michael L. Arnold
language : en
Publisher: OUP Oxford
Release Date : 2008-10-02

Reticulate Evolution And Humans written by Michael L. Arnold and has been published by OUP Oxford this book supported file pdf, txt, epub, kindle and other format this book has been release on 2008-10-02 with Science categories.

Reticulate Evolution and Humans is the first book to describe the effect of genetic exchange on the origin and evolution of our own species as well as those species with which we have and continue to interact closely, both evolutionarily and culturally. After demonstrating how genetic exchange has affected H. sapiens, the book goes on to describe how the same processes have structured the evolution of organisms on which the human species depends for shelter, sustenance and companionship. It also considers the "dark-side ̈of gene transfer as it pertains to the evolution and adaptation of human disease vectors and diseases. The development of the central thesis of this book - that reticulate evolution via introgressive hybridization and lateral gene transfer has been a pervasive factor in the evolution and cultural development of H. sapiens, its ancestors, sister taxa and associated organisms - reveals the extent of these processes across the widest of taxonomic, temporal and spatial bounds. We cannot escape the conclusion that we are constantly fed, entertained, sheltered, attacked and killed by organisms that possess mosaic genomes reflective of widespread genetic exchange during evolutionary diversification.

Reticulate Evolution In Gaudichaudia Malpighiaceae

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Author : Steven Lee Jessup
language : en
Publisher:
Release Date : 1994

Reticulate Evolution In Gaudichaudia Malpighiaceae written by Steven Lee Jessup and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 1994 with Gaudichaudia categories.

The Adaptive Seascape

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Author : David J. Merrell
language : en
Publisher: U of Minnesota Press
Release Date : 1994

The Adaptive Seascape written by David J. Merrell and has been published by U of Minnesota Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 1994 with Science categories.

Based on observational and experimental data, in natural populations of plants and animals studied in the field and in the laboratory, this perspective unravels the hidden and often poorly founded assumptions underlying some of the more troublesome controversies in evolutionary biology today

Problem Solving Handbook In Computational Biology And Bioinformatics

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Author : Lenwood S. Heath
language : en
Publisher: Springer Science & Business Media
Release Date : 2010-10-20

Problem Solving Handbook In Computational Biology And Bioinformatics written by Lenwood S. Heath and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2010-10-20 with Science categories.

Bioinformatics is growing by leaps and bounds; theories/algorithms/statistical techniques are constantly evolving. Nevertheless, a core body of algorithmic ideas have emerged and researchers are beginning to adopt a "problem solving" approach to bioinformatics, wherein they use solutions to well-abstracted problems as building blocks to solve larger scope problems. Problem Solving Handbook for Computational Biology and Bioinformatics is an edited volume contributed by world renowned leaders in this field. This comprehensive handbook with problem solving emphasis, covers all relevant areas of computational biology and bioinformatics. Web resources and related themes are highlighted at every opportunity in this central easy-to-read reference. Designed for advanced-level students, researchers and professors in computer science and bioengineering as a reference or secondary text, this handbook is also suitable for professionals working in this industry.

Unity And Disunity In Evolutionary Biology

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Author : Richard G. Delisle
language : en
Publisher: Springer Nature
Release Date : 2024-09-02

Unity And Disunity In Evolutionary Biology written by Richard G. Delisle and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-09-02 with Science categories.

It is not uncommon to see in major areas of research concerned with science that historical studies are accompanied by the rise of complementary or contradictory historiographies. With time, it seems, scholars discover new approaches to study topics, thus questioning old concepts, traditions, periodizations and historical labels. Apparently, this has not been the case in evolutionary thought. In that area, the main historiographic labels such as Darwinian Revolution, Eclipse of Darwinism, and Modern Synthesis have been in place and largely uncontested for about 50 years. Such labels seem to work as irrefutable, and often hidden, premises of many historical reconstructions, philosophical analyses, and scientific conceptualizations. This volume aims to move beyond this state of affair, opening new thinking avenues by revisiting the traditional historiography and laying the groundwork for establishing a “new historiography” that considers the intertwined threads that compose evolutionary biology. Notably, evolutionary studies seem to have been marked by the tension between unification attempts and the proliferation of approaches, methodologies, and styles of thinking. As the contributors to this volume illustrate, research traditions branched off throughout the history of evolutionary thought, before and after Charles Darwin. The resulting complexity challenges traditional thinking categories, throwing a somewhat different light on a more recent label like the Extended Evolutionary Synthesis. More than 40 years after the now classic, The Evolutionary Synthesis: Perspectives on the Unification of Biology (1980), edited by Ernst Mayr and William Provine, the contributors to this volume aim to reevaluate where evolutionary biology stands today.

Evolving Software Systems

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Author : Tom Mens
language : en
Publisher: Springer Science & Business Media
Release Date : 2014-01-08

Evolving Software Systems written by Tom Mens and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-01-08 with Computers categories.

During the last few years, software evolution research has explored new domains such as the study of socio-technical aspects and collaboration between different individuals contributing to a software system, the use of search-based techniques and meta-heuristics, the mining of unstructured software repositories, the evolution of software requirements, and the dynamic adaptation of software systems at runtime. Also more and more attention is being paid to the evolution of collections of inter-related and inter-dependent software projects, be it in the form of web systems, software product families, software ecosystems or systems of systems. With this book, the editors present insightful contributions on these and other domains currently being intensively explored, written by renowned researchers in the respective fields of software evolution. Each chapter presents the state of the art in a particular topic, as well as the current research, available tool support and remaining challenges. The book is complemented by a glossary of important terms used in the community, a reference list of nearly 1,000 papers and books and tips on additional resources that may be useful to the reader (reference books, journals, standards and major scientific events in the domain of software evolution and datasets). This book is intended for all those interested in software engineering, and more particularly, software maintenance and evolution. Researchers and software practitioners alike will find in the contributed chapters an overview of the most recent findings, covering a broad spectrum of software evolution topics. In addition, it can also serve as the basis of graduate or postgraduate courses on e.g., software evolution, requirements engineering, model-driven software development or social informatics.

Reconstructing The Tree Of Life

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Author : Trevor R. Hodkinson
language : en
Publisher: CRC Press
Release Date : 2006-12-26

Reconstructing The Tree Of Life written by Trevor R. Hodkinson and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2006-12-26 with Mathematics categories.

To document the world's diversity of species and reconstruct the tree of life we need to undertake some simple but mountainous tasks. Most importantly, we need to tackle species rich groups. We need to collect, name, and classify them, and then position them on the tree of life. We need to do this systematically across all groups of organisms and b

Plant Evolution

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Author : Karl J. Niklas
language : en
Publisher: University of Chicago Press
Release Date : 2016-08-12

Plant Evolution written by Karl J. Niklas and has been published by University of Chicago Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-08-12 with Science categories.

Although plants comprise more than 90% of all visible life, and land plants and algae collectively make up the most morphologically, physiologically, and ecologically diverse group of organisms on earth, books on evolution instead tend to focus on animals. This organismal bias has led to an incomplete and often erroneous understanding of evolutionary theory. Because plants grow and reproduce differently than animals, they have evolved differently, and generally accepted evolutionary views—as, for example, the standard models of speciation—often fail to hold when applied to them. Tapping such wide-ranging topics as genetics, gene regulatory networks, phenotype mapping, and multicellularity, as well as paleobotany, Karl J. Niklas’s Plant Evolution offers fresh insight into these differences. Following up on his landmark book The Evolutionary Biology of Plants—in which he drew on cutting-edge computer simulations that used plants as models to illuminate key evolutionary theories—Niklas incorporates data from more than a decade of new research in the flourishing field of molecular biology, conveying not only why the study of evolution is so important, but also why the study of plants is essential to our understanding of evolutionary processes. Niklas shows us that investigating the intricacies of plant development, the diversification of early vascular land plants, and larger patterns in plant evolution is not just a botanical pursuit: it is vital to our comprehension of the history of all life on this green planet.

Evolution A Grand Monument To Human Stupidity

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Author : Daniel Jappah
language : en
Publisher: Lulu.com
Release Date : 2007-09-01

Evolution A Grand Monument To Human Stupidity written by Daniel Jappah and has been published by Lulu.com this book supported file pdf, txt, epub, kindle and other format this book has been release on 2007-09-01 with Science categories.

The theory of evolution has changed so much- claiming that humans are closely related genetically to chimps, mice, donkeys, and even fish - that the theory is now a blurred mess masquerading as a scientific fact. It's a theory built on countless speculations, scientific fraud, and multiple conflicting theories. Garnering the evidence from biology, chemistry, genetics, geology, history, paleontology, and physics, evolution is exposed as a racist philosophy and a false science that provided the "scientific" justification for the Holocaust and other genocides, including the plot to silently exterminate American minorities through abortion and birth control. The evidence for evolution is examined in the light of genuine science. You may not like what you read, but you can't argue with the facts.