Stochastic And Quantum Dynamics Of Biomolecular Systems
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Stochastic And Quantum Dynamics Of Biomolecular Systems
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Author : Christopher Bernido
language : en
Publisher: American Institute of Physics
Release Date : 2008-06-25
Stochastic And Quantum Dynamics Of Biomolecular Systems written by Christopher Bernido and has been published by American Institute of Physics this book supported file pdf, txt, epub, kindle and other format this book has been release on 2008-06-25 with Mathematics categories.
Conference Location and Date: Jagna, Bohol, Philippines, 3-5 January 2008
Quantum Dynamics
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Author : Eric R. Bittner
language : en
Publisher: CRC Press
Release Date : 2009-07-21
Quantum Dynamics written by Eric R. Bittner and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009-07-21 with Science categories.
Even though time-dependent spectroscopic techniques continue to push the frontier of chemical physics, they receive scant mention in introductory courses and are poorly covered in standard texts. Quantum Dynamics: Applications in Biological and Materials Systems bridges the gap between what is traditionally taught in a one-semester quantum chemistr
Stochastic Dynamics Of Reacting Biomolecules
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Author : Werner Ebeling
language : en
Publisher: World Scientific
Release Date : 2003-01-29
Stochastic Dynamics Of Reacting Biomolecules written by Werner Ebeling and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 2003-01-29 with Science categories.
This is a book about the physical processes in reacting complex molecules, particularly biomolecules. In the past decade scientists from different fields such as medicine, biology, chemistry and physics have collected a huge amount of data about the structure, dynamics and functioning of biomolecules. Great progress has been achieved in exploring the structure of complex molecules. However, there is still a lack of understanding of the dynamics and functioning of biological macromolecules. In particular this refers to enzymes, which are the basic molecular machines working in living systems. This book contributes to the exploration of the physical mechanisms of these processes, focusing on critical aspects such as the role of nonlinear excitations and of stochastic effects. An extensive range of original results has been obtained in the last few years by the authors, and these results are presented together with a comprehensive survey of the state of the art in the field. Contents:Introduction to the Reaction Theory and Cluster Dynamics of Enzymes (W Ebeling, A Netrebko & Yu Romanovsky)Tools of Stochastic Dynamics (L Schimansky-Geier & P Talkner)Motion of Test Particles in a 2-D Potential Landscape (O A Chichigina, A V Netrebko & N V Netrebko)Microscopic Simulations of Activation and Dissociation (W Ebeling, V Yu Podlipchuk, M G Sapeshinsky & A A Valuev)Excitations on Rings of Molecules (A Chetverikov, W Ebeling, M Jenssen & Yu Romanovsky)Fermi Resonance and Kramers Problem in 2-D Force Field (S V Kroo, A V Netrebko, Yu M Romanovsky & L Schimansky-Geier)Molecular Scissors. Cluster Model of Acetylcholinesterase (A Yu Chikishev, S V Kroo, A V Netrebko, N V Netrebko & Yu Romanovsky)Dynamics of Proton Transfer in the Active Site of Chymotrypsin (A Yu Chikishev, B A Grishanin & E V Shuvalova)On the Damping of Cluster Oscillations in Protein Molecules (A Yu Chikishev, A V Netrebko & Yu M Romanovsky)Protein Dynamics and New Approaches to the Molecular Mechanisms of Protein Functioning (K V Shaitan) Readership: Researchers and graduate students in physics, biophysics, molecular biology and the life sciences; experts on nonlinear dynamics and the stochastic process in molecular systems and biomolecules. Keywords:Stochastic Dynamics;Reacting Complex Molecules;Biomolecules;Enzymatic Reactions;Molecular Dynamics;Nonlinear Excitations;Resonances
Stochastic Dynamics And Energetics Of Biomolecular Systems
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Author : Artem Ryabov
language : en
Publisher: Springer
Release Date : 2015-11-28
Stochastic Dynamics And Energetics Of Biomolecular Systems written by Artem Ryabov and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-11-28 with Science categories.
This thesis both broadens and deepens our understanding of the Brownian world. It addresses new problems in diffusion theory that have recently attracted considerable attention, both from the side of nanotechnology and from the viewpoint of pure academic research. The author focusses on the difussion of interacting particles in restricted geometries and under externally controlled forces. These geometries serve, for example, to model ion transport through narrow channels in cell membranes or a Brownian particle diffusing in an optical trap, now a paradigm for both theory and experiment. The work is exceptional in obtaining explicit analytically formulated answers to such realistic, experimentally relevant questions. At the same time, with its detailed exposition of the problems and a complete set of references, it presents a clear and broadly accessible introduction to the domain. Many of the problem settings and the corresponding exact asymptotic laws are completely new in diffusion theory.
Methods And Applications Of White Noise Analysis In Interdisciplinary Sciences
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Author : Christopher C Bernido
language : en
Publisher: World Scientific
Release Date : 2014-11-27
Methods And Applications Of White Noise Analysis In Interdisciplinary Sciences written by Christopher C Bernido and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-11-27 with Mathematics categories.
Analysis, modeling, and simulation for better understanding of diverse complex natural and social phenomena often require powerful tools and analytical methods. Tractable approaches, however, can be developed with mathematics beyond the common toolbox. This book presents the white noise stochastic calculus, originated by T Hida, as a novel and powerful tool in investigating physical and social systems. The calculus, when combined with Feynman's summation-over-all-histories, has opened new avenues for resolving cross-disciplinary problems. Applications to real-world complex phenomena are further enhanced by parametrizing non-Markovian evolution of a system with various types of memory functions. This book presents general methods and applications to problems encountered in complex systems, scaling in industry, neuroscience, polymer physics, biophysics, time series analysis, relativistic and nonrelativistic quantum systems.
Stochastic Dynamics For Systems Biology
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Author : Christian Mazza
language : en
Publisher: CRC Press
Release Date : 2016-04-19
Stochastic Dynamics For Systems Biology written by Christian Mazza and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-04-19 with Mathematics categories.
Stochastic Dynamics for Systems Biology is one of the first books to provide a systematic study of the many stochastic models used in systems biology. The book shows how the mathematical models are used as technical tools for simulating biological processes and how the models lead to conceptual insights on the functioning of the cellular processing
Biomolecular Structure And Dynamics
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Author : G. Vergoten
language : en
Publisher: Springer Science & Business Media
Release Date : 2012-12-06
Biomolecular Structure And Dynamics written by G. Vergoten and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2012-12-06 with Science categories.
Biomolecular Structure and Dynamics describes recent fundamental advances in the experimental and theoretical study of molecular dynamics and stochastic dynamic simulations, X-ray crystallography and NMR of biomolecules, the structure of proteins and its prediction, time resolved Fourier transform IR spectroscopy of biomolecules, the computation of free energy, applications of vibrational CD of nucleic acids, and solid state NMR. Further presentations include recent advances in UV resonance Raman spectroscopy of biomolecules, semiempirical MO methods, empirical force fields, quantitative studies of the structure of proteins in water by Fourier transform IR, and density functional theory. Metal-ligand interactions, DFT treatment of organometallic and biological systems, and simulation vs. X-ray and far IR experiments are also discussed in some detail. The book provides a broad perspective of the current theoretical aspects and recent experimental findings in the field of biomolecular dynamics, revealing future research trends, especially in areas where theoreticians and experimentalists could fruitfully collaborate.
The Geography Of Networks And R D Collaborations
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Author : Thomas Scherngell
language : en
Publisher: Springer Science & Business Media
Release Date : 2014-01-20
The Geography Of Networks And R D Collaborations written by Thomas Scherngell and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-01-20 with Business & Economics categories.
The geography of networks and R&D collaborations, in particular the spatial dimension of interactions between organisations performing joint R&D, have attracted a burst of attention in the last decade, both in the scientific study of the networks and in the policy sector. The volume is intended to bring together a selection of articles providing novel theoretical and empirical insights into the geographical dynamics of such networks and R&D collaborations, using new, systematic data sources and employing cutting-edge spatial analysis and spatial econometric techniques. It comprises a section on analytic advances and methodology and two thematic sections on structure and spatial characteristics of R&D networks and the impact of R&D networks and policy implications. The edited volume provides a collection of high-level research contributions with an aim to contribute to the recent debate in economic geography and regional science on how the structure of formal and informal networks modifies and influences the spatial and temporal diffusion of knowledge.
Stochastic And Infinite Dimensional Analysis
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Author : Christopher C. Bernido
language : en
Publisher: Birkhäuser
Release Date : 2016-08-10
Stochastic And Infinite Dimensional Analysis written by Christopher C. Bernido and has been published by Birkhäuser this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-08-10 with Mathematics categories.
This volume presents a collection of papers covering applications from a wide range of systems with infinitely many degrees of freedom studied using techniques from stochastic and infinite dimensional analysis, e.g. Feynman path integrals, the statistical mechanics of polymer chains, complex networks, and quantum field theory. Systems of infinitely many degrees of freedom create their particular mathematical challenges which have been addressed by different mathematical theories, namely in the theories of stochastic processes, Malliavin calculus, and especially white noise analysis. These proceedings are inspired by a conference held on the occasion of Prof. Ludwig Streit’s 75th birthday and celebrate his pioneering and ongoing work in these fields.
Quantum Processes In Biology
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Author : José Antonio Fornés
language : en
Publisher: Springer
Release Date : 2024-06-16
Quantum Processes In Biology written by José Antonio Fornés and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-06-16 with Science categories.
In recent years, extensive research on stochastic processes such as neuron networks, molecular motors, dynamics models, anomalous diffusion, and disordered media has led to the development of various methods for applying the Classical and Quantum Smoluchowski Equation to these phenomena. This book focuses on presenting the solution to the Fokker-Planck equation using the Crank-Nicholson formalism. This method is particularly effective for handling systems with numerous interactions, requiring vector and matrix-oriented approaches suitable for implementation in Matlab. Among the topics treated in the book are: Dynamics of protons in DNA, Photosynthesis and the quantum mechanochemical model, Entanglement, coherence and decoherence, Excitons in the Fenna-Mathews-Olson complex, and Energy exchange between cells. The author has made an incredible work in facilitating the understanding of these complex topics. This book includes a brief and clear explanation of the Quantum theory and also includes code to build useful software to use in research environments. This volume is particularly helpful for graduate students in physics and biology interested in understanding biological processes with the use of quantum physics tools.