Testing Character Evolution Models In Phylogenetic Paleobiology


Testing Character Evolution Models In Phylogenetic Paleobiology
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Testing Character Evolution Models In Phylogenetic Paleobiology


Testing Character Evolution Models In Phylogenetic Paleobiology
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Author : April Wright
language : en
Publisher: Cambridge University Press
Release Date : 2021-08-26

Testing Character Evolution Models In Phylogenetic Paleobiology written by April Wright and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-08-26 with Science categories.


Macroevolutionary inference has historically been treated as a two-step process, involving the inference of a tree, and then inference of a macroevolutionary model using that tree. Newer models blend the two steps. These methods make more complete use of fossils than the previous generation of Bayesian phylogenetic models. They also involve many more parameters than prior models, including parameters about which empiricists may have little intuition. In this Element, we set forth a framework for fitting complex, hierarchical models. The authors ultimately fit and use a joint tree and diversification model to estimate a dated phylogeny of the Cincta (Echinodermata), a morphologically distinct group of Cambrian echinoderms that lack the fivefold radial symmetry characteristic of extant members of the phylum. Although the phylogeny of cinctans remains poorly supported in places, this Element shows how models of character change and diversification contribute to understanding patterns of phylogenetic relatedness and testing macroevolutionary hypotheses.



Fossils Phylogeny And Form


Fossils Phylogeny And Form
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Author : Jonathan M. Adrain
language : en
Publisher: Springer Science & Business Media
Release Date : 2012-12-06

Fossils Phylogeny And Form written by Jonathan M. Adrain and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2012-12-06 with Science categories.


Phylogenetic analysis and morphometrics have been developed by biologists into rigorous analytic tools for testing hypotheses about the relationships between groups of species. This book applies these tools to paleontological data. The fossil record is our one true chronicle of the history of life, preserving a set of macroevolutionary patterns; thus various hypotheses about evolutionary processes can be tested in the fossil record using phylogentic analysis and morphometrics. The first book of its type, Fossils, Phylogeny, and Form will be useful in evolutionary biology, paleontology, systematics, evolutionary development, theoretical biology, biogeography, and zoology. It will also provide a practical, researcher-friendly gateway into computer-based phylogenetics and morphometrics.



A Review And Evaluation Of Homology Hypotheses In Echinoderm Paleobiology


A Review And Evaluation Of Homology Hypotheses In Echinoderm Paleobiology
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Author : Colin D. Sumrall
language : en
Publisher: Cambridge University Press
Release Date : 2023-04-13

A Review And Evaluation Of Homology Hypotheses In Echinoderm Paleobiology written by Colin D. Sumrall and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-04-13 with Science categories.


The extraxial-axial theory (EAT) and universal elemental homology (UEH) are often portrayed as mutually exclusive hypotheses of homology within pentaradiate Echinodermata. EAT describes homology upon the echinoderm bauplan, interpreted through early post-metamorphic growth and growth zones, dividing it into axial regions generally associated with elements of the ambulacral system and extraxial regions that are not. UEH describes the detailed construction of the axial skeleton, dividing it into homologous plates and plate series based on symmetry, early growth, and function. These hypotheses are not in conflict; the latter is rooted in refinement of the former. Some interpretive differences arise because many of the morphologies described from eleutherozoan development are difficult to reconcile with Paleozoic forms. Conversely, many elements described for Paleozoic taxa by UEH, such as the peristomial border plates, are absent in eleutherozoans. This Element recommends these two hypotheses be used together to generate a better understanding of homology across Echinodermata.



Molecular Paleobiology Of The Echinoderm Skeleton


Molecular Paleobiology Of The Echinoderm Skeleton
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Author : Jeffrey R. Thompson
language : en
Publisher: Cambridge University Press
Release Date : 2022-12-01

Molecular Paleobiology Of The Echinoderm Skeleton written by Jeffrey R. Thompson and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-12-01 with Science categories.


The echinoderms are an ideal group to understand evolution from a holistic, interdisciplinary framework. The genetic regulatory networks underpinning development in echinoderms are some of the best known for any model group. Additionally, the echinoderms have an excellent fossil record, elucidating in in detail the evolutionary changes underpinning morphological evolution. In this Element, the echinoderms are discussed as a model group for molecular palaeobiological studies, integrating what is known of their development, genomes, and fossil record. Together, these insights shed light on the molecular and morphological evolution underpinning the vast biodiversity of echinoderms, and the animal kingdom more generally.



The Ecology Of Biotic Interactions In Echinoids


The Ecology Of Biotic Interactions In Echinoids
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Author : Elizabeth Petsios
language : en
Publisher: Cambridge University Press
Release Date : 2023-10-31

The Ecology Of Biotic Interactions In Echinoids written by Elizabeth Petsios and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-10-31 with Reference categories.


This Element reviews the ecologies of skeletal trace-producing interactions on echinoids in Modern ecosystems and the recognition of those biogenic traces in the fossil record. This title is also available as Open Access on Cambridge Core.



A Review Of Blastozoan Echinoderm Respiratory Structures


A Review Of Blastozoan Echinoderm Respiratory Structures
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Author : Sarah L. Sheffield
language : en
Publisher: Cambridge University Press
Release Date : 2022-12-31

A Review Of Blastozoan Echinoderm Respiratory Structures written by Sarah L. Sheffield and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-12-31 with categories.


Echinoderms have evolved diverse and disparate morphologies throughout the Phanerozoic. Among them, blastozoans, an extinct group of echinoderms that were an important component of Paleozoic marine ecosystems, are primarily subdivided into groups based on the morphology of respiratory structures. However, systematic and phylogenetic research from the past few decades have shown that respiratory structures in blastozoans are not group-defining and they have re-evolved throughout echinoderm evolution. This Element provides a review of the research involving blastozoan respiratory structures, along with research concerning the morphology, paleoecology, and ontogeny of each of the major groupings of blastozoans as it relates to their corresponding respiratory structures. Areas of future research in these groups are also highlighted.



Understanding The Tripartite Approach To Bayesian Divergence Time Estimation


Understanding The Tripartite Approach To Bayesian Divergence Time Estimation
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Author : Rachel C. M. Warnock
language : en
Publisher: Cambridge University Press
Release Date : 2021-02-04

Understanding The Tripartite Approach To Bayesian Divergence Time Estimation written by Rachel C. M. Warnock and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-02-04 with Science categories.


Placing evolutionary events in the context of geological time is a fundamental goal in paleobiology and macroevolution. In this Element we describe the tripartite model used for Bayesian estimation of time calibrated phylogenetic trees. The model can be readily separated into its component models: the substitution model, the clock model and the tree model. We provide an overview of the most widely used models for each component and highlight the advantages of implementing the tripartite model within a Bayesian framework.



Phylogenetic Comparative Methods A User S Guide For Paleontologists


Phylogenetic Comparative Methods A User S Guide For Paleontologists
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Author : Laura C. Soul
language : en
Publisher: Cambridge University Press
Release Date : 2021-05-27

Phylogenetic Comparative Methods A User S Guide For Paleontologists written by Laura C. Soul and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-05-27 with Science categories.


Recent advances in statistical approaches called phylogenetic comparative methods (PCMs) have provided paleontologists with a powerful set of analytical tools for investigating evolutionary tempo and mode in fossil lineages. However, attempts to integrate PCMs with fossil data often present workers with practical challenges or unfamiliar literature. This Element presents guides to the theory behind and the application of PCMs with fossil taxa. Based on an empirical dataset of Paleozoic crinoids, example analyses are presented to illustrate common applications of PCMs to fossil data, including investigating patterns of correlated trait evolution and macroevolutionary models of morphological change. The authors emphasize the importance of accounting for sources of uncertainty and discuss how to evaluate model fit and adequacy. Finally, the authors discuss several promising methods for modeling heterogeneous evolutionary dynamics with fossil phylogenies. Integrating phylogeny-based approaches with the fossil record provides a rigorous, quantitative perspective on understanding key patterns in the history of life.



Phylogenetic Analysis And Paleontology


Phylogenetic Analysis And Paleontology
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Author : Joel Cracraft
language : en
Publisher:
Release Date : 1979

Phylogenetic Analysis And Paleontology written by Joel Cracraft and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 1979 with Science categories.




Macclade


Macclade
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Author : Wayne P. Maddison
language : en
Publisher: Sinauer Associates, Incorporated
Release Date : 1992

Macclade written by Wayne P. Maddison and has been published by Sinauer Associates, Incorporated this book supported file pdf, txt, epub, kindle and other format this book has been release on 1992 with Computers categories.


MacClade is a computer program for graphic and interactive analysis of phylogeny and character evolution for Apple Macintosh computers. It displays a cladogram and paints the branches to indicate reconstructed character evolution. The user can manipulate cladograms on screen as MacClade gives diagnostic feedback. Systematics and other evolutionary biologists can use its flexible and analytical tools to examine phylogenies or interpret character evolution in a phylogenetic context, yet its ease of use should allow students to grasp phylogenetic principles in an interactive environment. This is the user's manual.