The Individual Microbe Single Cell Analysis And Agent Based Modelling
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The Individual Microbe Single Cell Analysis And Agent Based Modelling
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Author : Johan H. J. Leveau
language : en
Publisher: Frontiers Media SA
Release Date : 2019-02-19
The Individual Microbe Single Cell Analysis And Agent Based Modelling written by Johan H. J. Leveau and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2019-02-19 with categories.
Recent technological advances in single-cell microbiology, using flow cytometry, microfluidics, x-ray fluorescence microprobes, and single-cell -omics, allow for the observation of individuals within populations. Simultaneously, individual-based models (or more generally agent-based models) allow for individual microbes to be simulated. Bridging these techniques forms the foundation of individual-based ecology of microbes (µIBE). µIBE has elucidated genetic and phenotypic heterogeneity that has important consequences for a number of human interests, including antibiotic or biocide resistance, the productivity and stability of industrial fermentations, the efficacy of food preservatives, and the potential of pathogens to cause disease. Individual-based models can help us to understand how these sets of traits of individual microbes influence the above. This eBook compiles all publications from a recent Research Topic in Frontiers in Microbiology. It features recent research where individual observational and/or modelling techniques are applied to gain unique insights into the ecology of microorganisms. The Research Topic “The Individual Microbe: Single-Cell Analysis and Agent-Based Modelling” arose from the 2016 @ASM conference of the same name hosted by the American Society for Microbiology at its headquarters in Washington, D.C. We are grateful to ASM for funding and hosting this conference.
The Individual Microbe Single Cell Analysis And Agent Based Modelling
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Author : Johan H. J. Leveau
language : en
Publisher:
Release Date : 2019
The Individual Microbe Single Cell Analysis And Agent Based Modelling written by Johan H. J. Leveau and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2019 with categories.
This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact.
Microbiomics
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Author :
language : en
Publisher: Academic Press
Release Date : 2020-02-21
Microbiomics written by and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-02-21 with Medical categories.
Microbiomics: Dimensions, Applications, and Translational Implications of Human and Environmental Microbiome Research describes a new, holistic approach to microbiomics. International experts provide in-depth discussion of current research methods for studying human, environmental, viral and fungal microbiomes, as well as the implications of new discoveries for human health, nutrition, disease, cancer research, probiotics and in the food and agricultural industries. Distinct chapters covering culturomics and sub-microbiomes, such as the viriome and mycetobiome, provide an integrative framework for the expansion of microbiomics into new areas of application, as well as crosspollination between research areas. Detailed case studies include the use of microbiomics to develop natural products with antimicrobial properties, microbiomic enhancements in food and beverage technology, microbes for bioprotection and biopreservation, microbial tools to reduce antibiotic resistance, and maintenance and cultivation of human microbial communities. - Provides an integrated approach for realizing the potential of microbiomics across the life, environmental, food and agricultural sciences - Includes thorough analysis of human, environmental, viral and mycetol microbiomes, as well as methods and technology for identifying microbiotes - Features chapter contributions from international leaders in microbiomic methods, technology and applications
The Role Of Dispersal And Transmission In Structuring Microbial Communities
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Author : Peter Deines
language : en
Publisher: Frontiers Media SA
Release Date : 2022-11-22
The Role Of Dispersal And Transmission In Structuring Microbial Communities written by Peter Deines and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-11-22 with Science categories.
Pattern Formation In Biology
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Author : Luis Diambra
language : en
Publisher: Frontiers Media SA
Release Date : 2023-06-07
Pattern Formation In Biology written by Luis Diambra and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-06-07 with Science categories.
In Silico Immunology
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Author : Darren D.R. Flower
language : en
Publisher: Springer Science & Business Media
Release Date : 2007-04-16
In Silico Immunology written by Darren D.R. Flower and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2007-04-16 with Medical categories.
Whatever its final readership and impact, we, the Editors, feel this book is im portant. It addresses the realisation that there is a deep and abiding synergy, albeit one only now being properly explored and exploited, between immunol ogy and computational science. This area of intersection we christen in silico immunology. Immunology is an inspiration for computational scientists seek ing practical and philosophical metaphors for their work; but, at the same time, it is itself a biological discipline of such discombobulating complexity that only computational help as different as simulation and data warehousing can make its modern study tractable. Thus immunology both inspires but also requires computational science. This book deals in detail with the three main areas of in silico immunology: theoretical immunology, immunoinformatics, and artificial immune systems. While all of these are now well-established the interactions between the three are only beginning to be developed. It is a truly exciting time to be working in in silicio immunology. We are reaching a critical mass that will enable great strides to be taken and significant achievements to be made. Like David Hume, we may yet come to regret that this book falls still born from the press but we hope not. Hopefully it will instead strike a cord and tap into a burgeoning Zeitgeist ready to capitalise on the remarkable potential that is in silico immunology.
A First Course In Systems Biology
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Author : Eberhard Voit
language : en
Publisher: Garland Science
Release Date : 2017-09-05
A First Course In Systems Biology written by Eberhard Voit and has been published by Garland Science this book supported file pdf, txt, epub, kindle and other format this book has been release on 2017-09-05 with Computers categories.
A First Course in Systems Biology is an introduction for advanced undergraduate and graduate students to the growing field of systems biology. Its main focus is the development of computational models and their applications to diverse biological systems. The book begins with the fundamentals of modeling, then reviews features of the molecular inventories that bring biological systems to life and discusses case studies that represent some of the frontiers in systems biology and synthetic biology. In this way, it provides the reader with a comprehensive background and access to methods for executing standard systems biology tasks, understanding the modern literature, and launching into specialized courses or projects that address biological questions using theoretical and computational means. New topics in this edition include: default modules for model design, limit cycles and chaos, parameter estimation in Excel, model representations of gene regulation through transcription factors, derivation of the Michaelis-Menten rate law from the original conceptual model, different types of inhibition, hysteresis, a model of differentiation, system adaptation to persistent signals, nonlinear nullclines, PBPK models, and elementary modes. The format is a combination of instructional text and references to primary literature, complemented by sets of small-scale exercises that enable hands-on experience, and large-scale, often open-ended questions for further reflection.
Systems Medicine
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Author :
language : en
Publisher: Academic Press
Release Date : 2020-08-24
Systems Medicine written by and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-08-24 with Science categories.
Technological advances in generated molecular and cell biological data are transforming biomedical research. Sequencing, multi-omics and imaging technologies are likely to have deep impact on the future of medical practice. In parallel to technological developments, methodologies to gather, integrate, visualize and analyze heterogeneous and large-scale data sets are needed to develop new approaches for diagnosis, prognosis and therapy. Systems Medicine: Integrative, Qualitative and Computational Approaches is an innovative, interdisciplinary and integrative approach that extends the concept of systems biology and the unprecedented insights that computational methods and mathematical modeling offer of the interactions and network behavior of complex biological systems, to novel clinically relevant applications for the design of more successful prognostic, diagnostic and therapeutic approaches. This 3 volume work features 132 entries from renowned experts in the fields and covers the tools, methods, algorithms and data analysis workflows used for integrating and analyzing multi-dimensional data routinely generated in clinical settings with the aim of providing medical practitioners with robust clinical decision support systems. Importantly the work delves into the applications of systems medicine in areas such as tumor systems biology, metabolic and cardiovascular diseases as well as immunology and infectious diseases amongst others. This is a fundamental resource for biomedical students and researchers as well as medical practitioners who need to need to adopt advances in computational tools and methods into the clinical practice. Encyclopedic coverage: ‘one-stop’ resource for access to information written by world-leading scholars in the field of Systems Biology and Systems Medicine, with easy cross-referencing of related articles to promote understanding and further research Authoritative: the whole work is authored and edited by recognized experts in the field, with a range of different expertise, ensuring a high quality standard Digitally innovative: Hyperlinked references and further readings, cross-references and diagrams/images will allow readers to easily navigate a wealth of information
Computational Systems Biology Of Pathogen Host Interactions
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Author : Saliha Durmuş
language : en
Publisher: Frontiers Media SA
Release Date : 2016-05-30
Computational Systems Biology Of Pathogen Host Interactions written by Saliha Durmuş and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-05-30 with Microbiology categories.
A thorough understanding of pathogenic microorganisms and their interactions with host organisms is crucial to prevent infectious threats due to the fact that Pathogen-Host Interactions (PHIs) have critical roles in initiating and sustaining infections. Therefore, the analysis of infection mechanisms through PHIs is indispensable to identify diagnostic biomarkers and next-generation drug targets and then to develop strategic novel solutions against drug-resistance and for personalized therapy. Traditional approaches are limited in capturing mechanisms of infection since they investigate hosts or pathogens individually. On the other hand, the systems biology approach focuses on the whole PHI system, and is more promising in capturing infection mechanisms. Here, we bring together studies on the below listed sections to present the current picture of the research on Computational Systems Biology of Pathogen-Host Interactions: - Computational Inference of PHI Networks using Omics Data - Computational Prediction of PHIs - Text Mining of PHI Data from the Literature - Mathematical Modeling and Bioinformatic Analysis of PHIs Computational Inference of PHI Networks using Omics Data Gene regulatory, metabolic and protein-protein networks of PHI systems are crucial for a thorough understanding of infection mechanisms. Great advances in molecular biology and biotechnology have allowed the production of related omics data experimentally. Many computational methods are emerging to infer molecular interaction networks of PHI systems from the corresponding omics data. Computational Prediction of PHIs Due to the lack of experimentally-found PHI data, many computational methods have been developed for the prediction of pathogen-host protein-protein interactions. Despite being emerging, currently available experimental PHI data are far from complete for a systems view of infection mechanisms through PHIs. Therefore, computational methods are the main tools to predict new PHIs. To this end, the development of new computational methods is of great interest. Text Mining of PHI Data from Literature Despite the recent development of many PHI-specific databases, most data relevant to PHIs are still buried in the biomedical literature, which demands for the use of text mining techniques to unravel PHIs hidden in the literature. Only some rare efforts have been performed to achieve this aim. Therefore, the development of novel text mining methods specific for PHI data retrieval is of key importance for efficient use of the available literature. Mathematical Modeling and Bioinformatic Analysis of PHIs After the reconstruction of PHI networks experimentally and/or computationally, their mathematical modeling and detailed computational analysis is required using bioinformatics tools to get insights on infection mechanisms. Bioinformatics methods are increasingly applied to analyze the increasing amount of experimentally-found and computationally-predicted PHI data.
Catalysis
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Author : James J Spivey
language : en
Publisher: Royal Society of Chemistry
Release Date : 2024-03-27
Catalysis written by James J Spivey and has been published by Royal Society of Chemistry this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-03-27 with Science categories.
Looking at modern approaches to catalysis, this volume reviews the extensive literature published on this area. Chapter highlights include Fenton chemistry, advanced manufacturing in heterogeneous catalysis, membrane reactors for light alkane dehydrogenation, and new insights and enhancement of biocatalysts for biomass conversion in the bioproducts industry. Appealing to researchers in academia and industry, the detailed chapters bridge the gap from academic studies in the laboratory to practical applications in industry, not only for the catalysis field, but also for environmental protection. The book will be of great benefit to any researcher wanting a succinct reference on developments in this area now and looking to the future.