The Practical Bioinformatician
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Practical Bioinformatics
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Author : Michael J. Agostino
language : en
Publisher: Garland Pub
Release Date : 2013
Practical Bioinformatics written by Michael J. Agostino and has been published by Garland Pub this book supported file pdf, txt, epub, kindle and other format this book has been release on 2013 with Computers categories.
This guide is specifically designed for biology majors, with heavy emphasis on learning the steps necessary to perform bioinformatics analysis to answer biological questions. The chapters are focused on sequence analysis activities, a frequently performed subset of the field of bioinformatics.
Bioinformatics
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Author : Shui Qing Ye
language : en
Publisher: CRC Press
Release Date : 2007-08-20
Bioinformatics written by Shui Qing Ye and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2007-08-20 with Computers categories.
An emerging, ever-evolving branch of science, bioinformatics has paved the way for the explosive growth in the distribution of biological information to a variety of biological databases, including the National Center for Biotechnology Information. For growth to continue in this field, biologists must obtain basic computer skills while computer spe
Bioinformatics
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Author : Hamid D. Ismail
language : en
Publisher: CRC Press
Release Date : 2022-03-22
Bioinformatics written by Hamid D. Ismail and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-03-22 with Science categories.
Bioinformatics: A Practical Guide to NCBI Databases and Sequence Alignments provides the basics of bioinformatics and in-depth coverage of NCBI databases, sequence alignment, and NCBI Sequence Local Alignment Search Tool (BLAST). As bioinformatics has become essential for life sciences, the book has been written specifically to address the need of a large audience including undergraduates, graduates, researchers, healthcare professionals, and bioinformatics professors who need to use the NCBI databases, retrieve data from them, and use BLAST to find evolutionarily related sequences, sequence annotation, construction of phylogenetic tree, and the conservative domain of a protein, to name just a few. Technical details of alignment algorithms are explained with a minimum use of mathematical formulas and with graphical illustrations. Key Features Provides readers with the most-used bioinformatics knowledge of bioinformatics databases and alignments including both theory and application via illustrations and worked examples. Discusses the use of Windows Command Prompt, Linux shell, R, and Python for both Entrez databases and BLAST. The companion website (http://www.hamiddi.com/instructors/) contains tutorials, R and Python codes, instructor materials including slides, exercises, and problems for students. This is the ideal textbook for bioinformatics courses taken by students of life sciences and for researchers wishing to develop their knowledge of bioinformatics to facilitate their own research.
Practical Protein Bioinformatics
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Author : Florencio Pazos
language : en
Publisher: Springer
Release Date : 2014-11-28
Practical Protein Bioinformatics written by Florencio Pazos and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-11-28 with Science categories.
This book describes more than 60 web-accessible computational tools for protein analysis and is totally practical, with detailed explanations on how to use these tools and interpret their results and minimal mentions to their theoretical basis (only when that is required for making a better use of them). It covers a wide range of tools for dealing with different aspects of proteins, from their sequences, to their three-dimensional structures, and the biological networks they are immersed in. The selection of tools is based on the experience of the authors that lead a protein bioinformatics facility in a large research centre, with the additional constraint that the tools should be accessible through standard web browsers without requiring the local installation of specific software, command-line tools, etc. The web tools covered include those aimed to retrieve protein information, look for similar proteins, generate pair-wise and multiple sequence alignments of protein sequences, work with protein domains and motifs, study the phylogeny of a family of proteins, retrieve, manipulate and visualize protein three-dimensional structures, predict protein structural features as well as whole three-dimensional structures, extract biological information from protein structures, summarize large protein sets, study protein interaction and metabolic networks, etc. The book is associated to a dynamic web site that will reflect changes in the web addresses of the tools, updates of these, etc. It also contains QR codes that can be scanned with any device to direct its browser to the tool web site. This monograph will be most valuable for researchers in experimental labs without specific knowledge on bioinformatics or computing.
Bioinformatics
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Author : Andreas D. Baxevanis
language : en
Publisher: John Wiley & Sons
Release Date : 2004-03-24
Bioinformatics written by Andreas D. Baxevanis and has been published by John Wiley & Sons this book supported file pdf, txt, epub, kindle and other format this book has been release on 2004-03-24 with Computers categories.
"In this book, Andy Baxevanis and Francis Ouellette . . . haveundertaken the difficult task of organizing the knowledge in thisfield in a logical progression and presenting it in a digestibleform. And they have done an excellent job. This fine text will makea major impact on biological research and, in turn, on progress inbiomedicine. We are all in their debt." —Eric Lander from the Foreword Reviews from the First Edition "...provides a broad overview of the basic tools for sequenceanalysis ... For biologists approaching this subject for the firsttime, it will be a very useful handbook to keep on the shelf afterthe first reading, close to the computer." —Nature Structural Biology "...should be in the personal library of any biologist who usesthe Internet for the analysis of DNA and protein sequencedata." —Science "...a wonderful primer designed to navigate the novice throughthe intricacies of in scripto analysis ... The accomplished genesearcher will also find this book a useful addition to theirlibrary ... an excellent reference to the principles ofbioinformatics." —Trends in Biochemical Sciences This new edition of the highly successful Bioinformatics:A Practical Guide to the Analysis of Genes and Proteinsprovides a sound foundation of basic concepts, with practicaldiscussions and comparisons of both computational tools anddatabases relevant to biological research. Equipping biologists with the modern tools necessary to solvepractical problems in sequence data analysis, the Second Editioncovers the broad spectrum of topics in bioinformatics, ranging fromInternet concepts to predictive algorithms used on sequence,structure, and expression data. With chapters written by experts inthe field, this up-to-date reference thoroughly covers vitalconcepts and is appropriate for both the novice and the experiencedpractitioner. Written in clear, simple language, the book isaccessible to users without an advanced mathematical or computerscience background. This new edition includes: All new end-of-chapter Web resources, bibliographies, andproblem sets Accompanying Web site containing the answers to the problems,as well as links to relevant Web resources New coverage of comparative genomics, large-scale genomeanalysis, sequence assembly, and expressed sequence tags A glossary of commonly used terms in bioinformatics andgenomics Bioinformatics: A Practical Guide to the Analysis of Genesand Proteins, Second Edition is essential reading forresearchers, instructors, and students of all levels in molecularbiology and bioinformatics, as well as for investigators involvedin genomics, positional cloning, clinical research, andcomputational biology.
Algorithms In Bioinformatics
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Author : Wing-Kin Sung
language : en
Publisher: CRC Press
Release Date : 2009-11-24
Algorithms In Bioinformatics written by Wing-Kin Sung and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009-11-24 with Computers categories.
Thoroughly Describes Biological Applications, Computational Problems, and Various Algorithmic Solutions Developed from the author's own teaching material, Algorithms in Bioinformatics: A Practical Introduction provides an in-depth introduction to the algorithmic techniques applied in bioinformatics. For each topic, the author clearly details the bi
The Practical Bioinformatician
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Author : Limsoon Wong
language : en
Publisher: World Scientific
Release Date : 2004
The Practical Bioinformatician written by Limsoon Wong and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 2004 with Computers categories.
Computer scientists have increasingly been enlisted as OC bioinformaticiansOCO to assist molecular biologists in their research. This book is a practical introduction to bioinformatics for these computer scientists. The chapters are in-depth discussions by expert bioinformaticians on both general techniques and specific approaches to a range of selected bioinformatics problems. The book is organized into clusters of chapters on the following topics: . OCo Overview of modern molecular biology and a broad spectrum of techniques from computer science OCo data mining, machine learning, mathematical modeling, sequence alignment, data integration, workflow development, etc. OCo In-depth discussion of computational recognition of functional and regulatory sites in DNA sequences. OCo Incisive discussion of computational prediction of secondary structure of RNA sequences. OCo Overview of computational prediction of protein cellular localization, and selected discussions of inference of protein function. OCo Overview of methods for discovering proteinOCoprotein interactions. OCo Detailed discussion of approaches to gene expression analysis for the diagnosis of diseases, the treatment of diseases, and the understanding of gene functions. OCo Case studies on analysis of phylogenies, functional annotation of proteins, construction of purpose-built integrated biological databases, and development of workflows underlying the large-scale-effort gene discovery. Sample Chapter(s). Chapter 4: Techniques for Recognition of Translation Initiation Sites (385 KB). Chapter 10: Homology Search Methods (483 KB). Contents: Molecular Biology for the Practical Bioinformatician; Strategy and Planning of Bioinformatics Experiments; Data Mining Techniques for the Practical Bioinformatician; Techniques for Recognition of Translation Initiation Sites; How Neural Networks Find Promoters Using Recognition of Micro-Structural Promoter Components; Neural-Statistical Model of TATA-Box Motifs in Eukaryotes; Tuning the Dragon Promoter Finder System for Human Promoter Recognition; RNA Secondary Structure Prediction; Protein Localization Prediction; Homology Search Methods; Analysis of Phylogeny: A Case Study on Saururaceae; Functional Annotation and Protein Families: From Theory to Practice; Discovering ProteinOCoProtein Interactions; Techniques for Analysis of Gene Expression; Genome-Wide cDNA Oligo Probe Design and Its Applications in i>Schizosaccharomyces Pombe; Mining New Motifs from cDNA Sequence Data; Technologies for Biological Data Integration; Construction of Biological Databases: A Case Study on the Protein Phosphatase DataBase (PPDB); A Family Classification Approach to Functional Annotation of Proteins; Informatics for Efficient EST-Based Gene Discovery in Normalized and Subtracted cDNA Libraries. Readership: Computer scientists planning to be a bioinformatician; computer science undergraduates in their sophomore and/or senior years."
Introduction To Bioinformatics
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Author : Stephen A. Krawetz
language : en
Publisher: Springer Science & Business Media
Release Date : 2003-01-31
Introduction To Bioinformatics written by Stephen A. Krawetz and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2003-01-31 with Science categories.
to Bioinformatics A Theoretical and Practical Approach Edited by Stephen A. Krawetz, PhD Wayne State University School of Medicine, Detroit MI and David D. Womble, PhD Wayne State University School of Medicine, Detroit, MI ~ Springer Science+ ~ Business Media, LLC © 2003 Springer Science+Business Media New York Originally published by Humana Press !ne. in 2003 Softcover reprint of the hardcover 1 st edition 2003 humanapress.com Ali rights reserved. No part of this book may be reproduced, stored in a retrieval system, or transmitted in any form or by any means, electronic, mechanical, photocopying, microfilming, recording, or otherwise without written permission from the Publisher. Ali papers, comments, opinions, conclusions, or recommendations are those of the author(s), and do not necessarily reflect the views of the publisher. This publication is printed on acid-free paper. G) ANSI Z39.48-1984 (American Standards Institute) Permanence of Paper for Printed Library Materials. Production Editor: Mark J. Breaugh. Cover design by Patricia F. Cleary and Paul A. Thiessen. Cover illustration by Paul A. Thiessen, chemicalgraphics.com.
Exploring Bioinformatics
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Author : Caroline St. Clair
language : en
Publisher: Jones & Bartlett Publishers
Release Date : 2013-12-12
Exploring Bioinformatics written by Caroline St. Clair and has been published by Jones & Bartlett Publishers this book supported file pdf, txt, epub, kindle and other format this book has been release on 2013-12-12 with Computers categories.
Thoroughly revised and updated, Exploring Bioinformatics: A Project-Based Approach, Second Edition is intended for an introductory course in bioinformatics at the undergraduate level. Through hands-on projects, students are introduced to current biological problems and then explore and develop bioinformatic solutions to these issues. Each chapter presents a key problem, provides basic biological concepts, introduces computational techniques to address the problem, and guides students through the use of existing web-based tools and software solutions. This progression prepares students to tackle the On-Your-Own Project, where they develop their own software solutions. Topics such as antibiotic resistance, genetic disease, and genome sequencing provide context and relevance to capture student interest.
Genome Analysis And Bioinformatics A Practical Approach
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Author : T. R. Sharma
language : en
Publisher:
Release Date : 2009-01-01
Genome Analysis And Bioinformatics A Practical Approach written by T. R. Sharma and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009-01-01 with Bioinformatics categories.
With the decoding of whole genome sequences of many organisms, new vistas of research have emerged in computational biology. The scientific community has free access to the genome sequence data from the public databases. Many times, it is really hard to make sense of these huge data of DNA and protein sequences. Therefore, bioinformatics tools are used to handle, store and analyze genome sequence data for the benefit of mankind. The book has been written in a simplest possible manner so that every one should understand the basic concepts of genome sequence analysis and bioinformatics. The book is structured in such a way so that readers should first know about how whole genome sequences are generated by using high throughput DNA sequencing technologies and then storing of sequences in biological databases. Second part deals with the basic principals involved in sequence analysis and applications of softwares along with practical exercises. Thirdly, data mining approaches for the discovery of genes and DNA markers have also been discussed. Besides, glossary of important terms and introduction to basic bioinformatics softwares has been included for the benefits of readers. The book will serve as a text book to the B. Tech (Bioinformatics & Biotechnology) students and would also be useful reference book to the postgraduate students and research scientists working in the areas of life sciences, genomics, biotechnology and molecular biology as well as Masters in Computer Applications (MCA) who are interested in bioinformatics.