Timetrees Incorporating Fossils And Molecules 2nd Edition
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Timetrees Incorporating Fossils And Molecules 2nd Edition
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Author : Michel Laurin
language : en
Publisher: Frontiers Media SA
Release Date : 2022-09-15
Timetrees Incorporating Fossils And Molecules 2nd Edition written by Michel Laurin and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-09-15 with Science categories.
Calibrating phylogenies to time is central to addressing many questions in evolutionary biology and macroevolution. The fossil record once provided our only source for establishing a timeline for evolution. However, the incompleteness of the fossil record and the non-uniformity of fossil recovery rate make it challenging to obtain precise estimates of divergence times from fossil evidence alone. Molecular dating, which combines evidence from the geological and molecular records, enables us to generate a much more complete and precise timeline of events. The molecular clock can be time-calibrated using temporal evidence from fossils and used to estimate divergence times based on the assumption that the rate of sequence evolution will be approximately constant over time and among lineages. Methodological challenges to applying this concept in practice have been to relax the assumption of constant evolutionary rates and to model the uncertainty associated with paleontological and geological calibrations. To this end, available statistical methods have become increasingly complex in order to capture key features of empirical data. These are typically applied using Bayesian inference, which provides a powerful framework for incorporating multiple sources of uncertainty. Although overall more effort has been expended in developing models of molecular sequence evolution, critical advances have also included approaches to modeling taxonomic diversification and fossilization. In particular, recent advances in birth-death process models have allowed for continuous sampling along lineages, enabling more information from the fossil record to be incorporated into dating analyses in a statistically coherent way. In addition, available dating methods can now be applied to scenarios in which no molecular data may be available, allowing for novel insights into the evolution of entirely extinct clades. Other recent innovations enable us to date divergence times among taxa that have no fossil record, including the use of gene duplication events or biogeographic evidence. Furthermore, time-calibrated trees are necessary for obtaining phylogenetic estimates of taxonomic diversification and extinction rates, which can now be jointly inferred along with lineage divergence times. These approaches offer an exciting opportunity to understand the evolution of life in deep time, although key challenges remain, especially with regards to modeling the processes of genome evolution, taxonomic diversification and fossil recovery. In this Research Topic, we focus on recent advances in methodology, outstanding challenges, and the application of molecular and paleontological dating methods to empirical case studies across the Tree of Life.
The Timetree Of Life
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Author : S. Blair Hedges
language : en
Publisher: OUP Oxford
Release Date : 2009-04-23
The Timetree Of Life written by S. Blair Hedges and has been published by OUP Oxford this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009-04-23 with Science categories.
The evolutionary history of life includes two primary components: phylogeny and timescale. Phylogeny refers to the branching order (relationships) of species or other taxa within a group and is crucial for understanding the inheritance of traits and for erecting classifications. However, a timescale is equally important because it provides a way to compare phylogeny directly with the evolution of other organisms and with planetary history such as geology, climate, extraterrestrialimpacts, and other features.The Timetree of Life is the first reference book to synthesize the wealth of information relating to the temporal component of phylogenetic trees. In the past, biologists have relied exclusively upon the fossil record to infer an evolutionary timescale. However, recent revolutionary advances in molecular biology have made it possible to not only estimate the relationships of many groups of organisms, but also to estimate their times of divergence with molecular clocks. The routineestimation and utilization of these so-called 'time-trees' could add exciting new dimensions to biology including enhanced opportunities to integrate large molecular data sets with fossil and biogeographic evidence (and thereby foster greater communication between molecular and traditional systematists). Theycould help estimate not only ancestral character states but also evolutionary rates in numerous categories of organismal phenotype; establish more reliable associations between causal historical processes and biological outcomes; develop a universally standardized scheme for biological classifications; and generally promote novel avenues of thought in many arenas of comparative evolutionary biology.This authoritative reference work brings together, for the first time, experts on all major groups of organisms to assemble a timetree of life. The result is a comprehensive resource on evolutionary history which will be an indispensable reference for scientists, educators, and students in the life sciences, earth sciences, and molecular biology. For each major group of organism, a representative is illustrated and a timetree of families and higher taxonomic groups is shown. Basic aspects ofthe evolutionary history of the group, the fossil record, and competing hypotheses of relationships are discussed. Details of the divergence times are presented for each node in the timetree, and primary literature references are included. The book is complemented by an online database(www.timetree.net) which allows researchers to both deposit and retrieve data.
Phylonyms
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Author : Kevin de Queiroz
language : en
Publisher: CRC Press
Release Date : 2020-04-30
Phylonyms written by Kevin de Queiroz and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-04-30 with Nature categories.
Phylonyms is an implementation of PhyloCode, which is a set of principles, rules, and recommendations governing phylogenetic nomenclature. Nearly 300 clades - lineages of organisms - are defined by reference to hypotheses of phylogenetic history rather than by taxonomic ranks and types. This volume will document the Real World uses of PhyloCode and will govern and apply to the names of clades, while species names will still be governed by traditional codes. Key Features Provides clear regulations for implementing new guidelines for naming lineages of organisms incorporates expressly evolutionary and phylogenetic principles Works with existing codes of nomenclature Eliminates the reliance on rank-based classification in favor of phylogenetic relationships Related Titles: Rieppel, O. Phylogenetic Systematics: Haeckel to Hennig (ISBN 978-1-4987-5488-0) Cantino, P. D. and de Queiroz, K. International Code of Phylogenetic Nomenclature (PhyloCode) (ISBN 978-1-138-33282-9).
Evolutionary Pathways In Nature
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Author : John C. Avise
language : en
Publisher: Cambridge University Press
Release Date : 2006-05-04
Evolutionary Pathways In Nature written by John C. Avise and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2006-05-04 with Science categories.
Reconstructing phylogenetic trees from DNA sequences has become a popular exercise in many branches of biology, and here the well-known geneticist John Avise explains why. Molecular phylogenies provide a genealogical backdrop for interpreting the evolutionary histories of many other types of biological traits (anatomical, behavioral, ecological, physiological, biochemical and even geographical). Guiding readers on a natural history tour along dozens of evolutionary pathways, the author describes how creatures ranging from microbes to elephants came to possess their current phenotypes. Essential reading for college students, professional biologists and anyone interested in natural history and biodiversity, this book is packed with fascinating examples of evolutionary puzzles from across the animal kingdom; how the toucan got its enormous bill, how reptiles grow back lost limbs and why Arctic fish don't freeze.
Early Flowers And Angiosperm Evolution
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Author : Else Marie Friis
language : en
Publisher: Cambridge University Press
Release Date : 2011-08-18
Early Flowers And Angiosperm Evolution written by Else Marie Friis and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2011-08-18 with Science categories.
The recent discovery of diverse fossil flowers and floral organs in Cretaceous strata has revealed astonishing details about the structural and systematic diversity of early angiosperms. Exploring the rich fossil record that has accumulated over the last three decades, this is a unique study of the evolutionary history of flowering plants from their earliest phases in obscurity to their dominance in modern vegetation. The discussion provides comprehensive biological and geological background information, before moving on to summarise the fossil record in detail. Including previously unpublished results based on research into Early and Late Cretaceous fossil floras from Europe and North America, the authors draw on direct palaeontological evidence of the pattern of angiosperm evolution through time. Synthesising palaeobotanical data with information from living plants, this unique book explores the latest research in the field, highlighting connections with phylogenetic systematics, structure and the biology of extant angiosperms.
Evolving Genes And Proteins
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Author : Vernon Bryson
language : en
Publisher:
Release Date : 1965
Evolving Genes And Proteins written by Vernon Bryson and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 1965 with Biochemistry categories.
Details new perspectives of structural and functional features of proteins and nucleic acids in biochemistry.
The Molecular Evolutionary Clock
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Author : Simon Y. W. Ho
language : en
Publisher: Springer Nature
Release Date : 2021-01-18
The Molecular Evolutionary Clock written by Simon Y. W. Ho and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-01-18 with Science categories.
This book presents coverage of the principles and practice of molecular clocks, which have provided fascinating and unprecedented insights into the evolutionary timescale of life on earth. It begins by following the early development of the molecular evolutionary clock in the 1960s, and leads to the complex statistical approaches that are now used to analyse genome sequences. The chapters of this book have been contributed by leading experts in the field and address the important issues of evolutionary rates, molecular dating, and phylogenomic analysis. This is the first time that these different aspects of the molecular clock have been brought together in a single, comprehensive volume. It is an invaluable reference for students and researchers interested in evolutionary biology, genetic analysis, and genomic evolution.
The Monkey S Voyage
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Author : Alan de Queiroz
language : en
Publisher: Basic Books
Release Date : 2014-01-07
The Monkey S Voyage written by Alan de Queiroz and has been published by Basic Books this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-01-07 with Science categories.
Throughout the world, closely related species are found on landmasses separated by wide stretches of ocean. What explains these far-flung distributions? Why are such species found where they are across the Earth? Since the discovery of plate tectonics, scientists have conjectured that plants and animals were scattered over the globe by riding pieces of ancient supercontinents as they broke up. In the past decade, however, that theory has foundered, as the genomic revolution has made reams of new data available. And the data has revealed an extraordinary, stranger-than-fiction story that has sparked a scientific upheaval. In The Monkey's Voyage, biologist Alan de Queiroz describes the radical new view of how fragmented distributions came into being: frogs and mammals rode on rafts and icebergs, tiny spiders drifted on storm winds, and plant seeds were carried in the plumage of sea-going birds to create the map of life we see today. In other words, these organisms were not simply constrained by continental fate; they were the makers of their own geographic destiny. And as de Queiroz shows, the effects of oceanic dispersal have been crucial in generating the diversity of life on Earth, from monkeys and guinea pigs in South America to beech trees and kiwi birds in New Zealand. By toppling the idea that the slow process of continental drift is the main force behind the odd distributions of organisms, this theory highlights the dynamic and unpredictable nature of the history of life. In the tradition of John McPhee's Basin and Range, The Monkey's Voyage is a beautifully told narrative that strikingly reveals the importance of contingency in history and the nature of scientific discovery.
Brains Through Time
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Author : Georg F. Striedter
language : en
Publisher: Oxford University Press, USA
Release Date : 2020
Brains Through Time written by Georg F. Striedter and has been published by Oxford University Press, USA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020 with Science categories.
"Much is conserved in vertebrate evolution, but significant changes in the nervous system occurred at the origin of vertebrates and in most of the major vertebrate lineages. This book examines these innovations and relates them to evolutionary changes in other organ systems, animal behavior, and ecological conditions at the time. The resulting perspective clarifies what makes the major vertebrate lineages unique and helps explain their varying degrees of ecological success. One of the book's major conclusions is that vertebrate nervous systems are more diverse than commonly assumed, at least among neurobiologists. Examples of important innovations include not only the emergence of novel brain regions, such as the cerebellum and neocortex, but also major changes in neuronal circuitry and functional organization. A second major conclusion is that many of the apparent similarities in vertebrate nervous systems resulted from convergent evolution, rather than inheritance from a common ancestor. For example, brain size and complexity increased numerous times, in many vertebrate lineages. In conjunction with these changes, olfactory inputs to the telencephalic pallium were reduced in several different lineages, and this reduction was associated with the emergence of pallial regions that process non-olfactory sensory inputs. These conclusions cast doubt on the widely held assumption that all vertebrate nervous systems are built according to a single, common plan. Instead, the book encourages readers to view both species similarities and differences as fundamental to a comprehensive understanding of nervous systems. Evolution; Phylogeny; Neuroscience; Neurobiology; Neuroanatomy; Functional Morphology; Paleoecology; Homology; Endocast; Brain"--
Bayesian Evolutionary Analysis With Beast
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Author : Alexei J. Drummond
language : en
Publisher: Cambridge University Press
Release Date : 2015-08-06
Bayesian Evolutionary Analysis With Beast written by Alexei J. Drummond and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-08-06 with Computers categories.
Covers theory, practice and programming in Bayesian phylogenetics with BEAST. The why, how and what of BEAST 2.