Algebraic And Combinatorial Computational Biology
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Algebraic And Combinatorial Computational Biology
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Author : Raina Robeva
language : en
Publisher: Academic Press
Release Date : 2018-10-08
Algebraic And Combinatorial Computational Biology written by Raina Robeva and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-10-08 with Mathematics categories.
Algebraic and Combinatorial Computational Biology introduces students and researchers to a panorama of powerful and current methods for mathematical problem-solving in modern computational biology. Presented in a modular format, each topic introduces the biological foundations of the field, covers specialized mathematical theory, and concludes by highlighting connections with ongoing research, particularly open questions. The work addresses problems from gene regulation, neuroscience, phylogenetics, molecular networks, assembly and folding of biomolecular structures, and the use of clustering methods in biology. A number of these chapters are surveys of new topics that have not been previously compiled into one unified source. These topics were selected because they highlight the use of technique from algebra and combinatorics that are becoming mainstream in the life sciences. Integrates a comprehensive selection of tools from computational biology into educational or research programs Emphasizes practical problem-solving through multiple exercises, projects and spinoff computational simulations Contains scalable material for use in undergraduate and graduate-level classes and research projects Introduces the reader to freely-available professional software Supported by illustrative datasets and adaptable computer code
Algebraic Statistics For Computational Biology
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Author : L. Pachter
language : en
Publisher: Cambridge University Press
Release Date : 2005-08-22
Algebraic Statistics For Computational Biology written by L. Pachter and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2005-08-22 with Mathematics categories.
This book, first published in 2005, offers an introduction to the application of algebraic statistics to computational biology.
Patterns In Permutations And Words
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Author : Sergey Kitaev
language : en
Publisher: Springer Science & Business Media
Release Date : 2011-08-30
Patterns In Permutations And Words written by Sergey Kitaev and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2011-08-30 with Computers categories.
There has been considerable interest recently in the subject of patterns in permutations and words, a new branch of combinatorics with its roots in the works of Rotem, Rogers, and Knuth in the 1970s. Consideration of the patterns in question has been extremely interesting from the combinatorial point of view, and it has proved to be a useful language in a variety of seemingly unrelated problems, including the theory of Kazhdan—Lusztig polynomials, singularities of Schubert varieties, interval orders, Chebyshev polynomials, models in statistical mechanics, and various sorting algorithms, including sorting stacks and sortable permutations. The author collects the main results in the field in this up-to-date, comprehensive reference volume. He highlights significant achievements in the area, and points to research directions and open problems. The book will be of interest to researchers and graduate students in theoretical computer science and mathematics, in particular those working in algebraic combinatorics and combinatorics on words. It will also be of interest to specialists in other branches of mathematics, theoretical physics, and computational biology. The author collects the main results in the field in this up-to-date, comprehensive reference volume. He highlights significant achievements in the area, and points to research directions and open problems. The book will be of interest to researchers and graduate students in theoretical computer science and mathematics, in particular those working in algebraic combinatorics and combinatorics on words. It will also be of interest to specialists in other branches of mathematics, theoretical physics, and computational biology.
Combinatorial Computational Biology Of Rna
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Author : Christian Reidys
language : en
Publisher: Springer Science & Business Media
Release Date : 2010-10-29
Combinatorial Computational Biology Of Rna written by Christian Reidys and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2010-10-29 with Mathematics categories.
In this monograph, new combinatorial and computational approaches in the study of RNA structures are presented which enhance both mathematics and computational biology. It begins with an introductory chapter, which motivates and sets the background of this research. In the following chapter, all the concepts are systematically developed. The reader will find * integration of more than forty research papers covering topics like, RSK-algorithm, reflection principle, singularity analysis and random graph theory * systematic presentation of the theory of pseudo-knotted RNA structures including their generating function, uniform generation as well as central and discrete limit theorems * computational biology of pseudo-knotted RNA structures, including dynamic programming paradigms and a new folding algorithm * analysis of neutral networks of pseudo knotted RNA structures and their random graph theory, including neutral paths, giant components and connectivity All algorithms presented are freely available through springer.com and implemented in C. A proofs section at the end contains the necessary technicalities. This book will serve graduate students and researchers in the fields of discrete mathematics, mathematical and computational biology. It is suitable as a textbook for a graduate course in mathematical and computational biology.
Algebraic Biology
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Author : Hirokazu Anai
language : en
Publisher: Springer
Release Date : 2007-08-13
Algebraic Biology written by Hirokazu Anai and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2007-08-13 with Computers categories.
This volume constitutes the refereed proceedings of the Second International Conference on Algebraic Biology. The conference served as an interdisciplinary forum for the presentation of research on all aspects of the application of symbolic computation in biology, including computer algebra, computational logic, and related methods. Papers also examine solutions to problems in biology using symbolic methods.
Combinatorial Pattern Matching
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Author : Moshe Lewenstein
language : en
Publisher: Springer
Release Date : 2006-07-01
Combinatorial Pattern Matching written by Moshe Lewenstein and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2006-07-01 with Computers categories.
This book constitutes the refereed proceedings of the 17th Annual Symposium on Combinatorial Pattern Matching, CPM 2006, held in Barcelona, Spain, July 2006. The book presents 33 revised full papers together with 3 invited talks, organized in topical sections on data structures, indexing data structures, probabilistic and algebraic techniques, applications in molecular biology, string matching, data compression, and dynamic programming.
Discrete And Topological Models In Molecular Biology
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Author : Nataša Jonoska
language : en
Publisher: Springer Science & Business Media
Release Date : 2013-12-23
Discrete And Topological Models In Molecular Biology written by Nataša Jonoska and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2013-12-23 with Computers categories.
Theoretical tools and insights from discrete mathematics, theoretical computer science, and topology now play essential roles in our understanding of vital biomolecular processes. The related methods are now employed in various fields of mathematical biology as instruments to "zoom in" on processes at a molecular level. This book contains expository chapters on how contemporary models from discrete mathematics – in domains such as algebra, combinatorics, and graph and knot theories – can provide perspective on biomolecular problems ranging from data analysis, molecular and gene arrangements and structures, and knotted DNA embeddings via spatial graph models to the dynamics and kinetics of molecular interactions. The contributing authors are among the leading scientists in this field and the book is a reference for researchers in mathematics and theoretical computer science who are engaged with modeling molecular and biological phenomena using discrete methods. It may also serve as a guide and supplement for graduate courses in mathematical biology or bioinformatics, introducing nontraditional aspects of mathematical biology.
Algebraic And Discrete Mathematical Methods For Modern Biology
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Author : Raina Robeva
language : en
Publisher: Academic Press
Release Date : 2015-05-09
Algebraic And Discrete Mathematical Methods For Modern Biology written by Raina Robeva and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-05-09 with Mathematics categories.
Written by experts in both mathematics and biology, Algebraic and Discrete Mathematical Methods for Modern Biology offers a bridge between math and biology, providing a framework for simulating, analyzing, predicting, and modulating the behavior of complex biological systems. Each chapter begins with a question from modern biology, followed by the description of certain mathematical methods and theory appropriate in the search of answers. Every topic provides a fast-track pathway through the problem by presenting the biological foundation, covering the relevant mathematical theory, and highlighting connections between them. Many of the projects and exercises embedded in each chapter utilize specialized software, providing students with much-needed familiarity and experience with computing applications, critical components of the "modern biology" skill set. This book is appropriate for mathematics courses such as finite mathematics, discrete structures, linear algebra, abstract/modern algebra, graph theory, probability, bioinformatics, statistics, biostatistics, and modeling, as well as for biology courses such as genetics, cell and molecular biology, biochemistry, ecology, and evolution. Examines significant questions in modern biology and their mathematical treatments Presents important mathematical concepts and tools in the context of essential biology Features material of interest to students in both mathematics and biology Presents chapters in modular format so coverage need not follow the Table of Contents Introduces projects appropriate for undergraduate research Utilizes freely accessible software for visualization, simulation, and analysis in modern biology Requires no calculus as a prerequisite Provides a complete Solutions Manual Features a companion website with supplementary resources
Combinatorial Optimization And Applications
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Author : Weili Wu
language : en
Publisher: Springer Science & Business Media
Release Date : 2010-12-09
Combinatorial Optimization And Applications written by Weili Wu and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2010-12-09 with Computers categories.
This book constitutes the refereed proceedings of the 4th International Conference on Combinatorial Optimization and Applications, COCOA 2010, held in Kailua-Kona, HI, USA, in December 2010. The 49 revised full papers were carefully reviewed and selected from 108 submissions.
Combinatorial Algorithms
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Author : W. F. Symth
language : en
Publisher: Springer
Release Date : 2013-01-07
Combinatorial Algorithms written by W. F. Symth and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2013-01-07 with Computers categories.
This book constitutes the thoroughly referred post-workshop proceedings of the 23rd International Workshop on Combinatorial Algorithms, IWOCA 2012, held in Krishnankoil, Tamil Nadu, India, in July 2012. The 32 revised full papers presented were carefully reviewed and selected from a total of 88 submissions. The papers are organized in topical sections in algorithms and data Structures, applications (including Bioinformatics, Networking, etc.), combinatorics of words and strings, combinatorial optimization, combinatorial enumeration, decompositions and combinatorial designs, complexity theory (structural and computational), computational biology and graph theory and combinatorics submissions.