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Applied Statistical Modelling For Ecologists


Applied Statistical Modelling For Ecologists
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Applied Statistical Modelling For Ecologists


Applied Statistical Modelling For Ecologists
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Author : Marc Kéry
language : en
Publisher: Elsevier
Release Date : 2024-07-18

Applied Statistical Modelling For Ecologists written by Marc Kéry and has been published by Elsevier this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-07-18 with Science categories.


**2025 PROSE Award Finalist in Environmental Science**Applied Statistical Modelling for Ecologists provides a gentle introduction to the essential models of applied statistics: linear models, generalized linear models, mixed and hierarchical models. All models are fit with both a likelihood and a Bayesian approach, using several powerful software packages widely used in research publications: JAGS, NIMBLE, Stan, and TMB. In addition, the foundational method of maximum likelihood is explained in a manner that ecologists can really understand.This book is the successor of the widely used Introduction to WinBUGS for Ecologists (Kéry, Academic Press, 2010). Like its parent, it is extremely effective for both classroom use and self-study, allowing students and researchers alike to quickly learn, understand, and carry out a very wide range of statistical modelling tasks.The examples in Applied Statistical Modelling for Ecologists come from ecology and the environmental sciences, but the underlying statistical models are very widely used by scientists across many disciplines. This book will be useful for anybody who needs to learn and quickly become proficient in statistical modelling, with either a likelihood or a Bayesian focus, and in the model-fitting engines covered, including the three latest packages NIMBLE, Stan, and TMB. - Contains a concise and gentle introduction to probability and applied statistics as needed in ecology and the environmental sciences - Covers the foundations of modern applied statistical modelling - Gives a comprehensive, applied introduction to what currently are the most widely used and most exciting, cutting-edge model fitting software packages: JAGS, NIMBLE, Stan, and TMB - Provides a highly accessible applied introduction to the two dominant methods of fitting parametric statistical models: maximum likelihood and Bayesian posterior inference - Details the principles of model building, model checking and model selection - Adopts a "Rosetta Stone" approach, wherein understanding of one software, and of its associated language, will be greatly enhanced by seeing the analogous code in other engines - Provides all code available for download for students, at https://www.elsevier.com/books-and-journals/book-companion/9780443137150



Applied Hierarchical Modeling In Ecology Analysis Of Distribution Abundance And Species Richness In R And Bugs


Applied Hierarchical Modeling In Ecology Analysis Of Distribution Abundance And Species Richness In R And Bugs
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Author : Marc Kéry
language : en
Publisher: Academic Press
Release Date : 2020-10-10

Applied Hierarchical Modeling In Ecology Analysis Of Distribution Abundance And Species Richness In R And Bugs written by Marc Kéry and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-10-10 with Nature categories.


Applied Hierarchical Modeling in Ecology: Analysis of Distribution, Abundance and Species Richness in R and BUGS, Volume Two: Dynamic and Advanced Models provides a synthesis of the state-of-the-art in hierarchical models for plant and animal distribution, also focusing on the complex and more advanced models currently available. The book explains all procedures in the context of hierarchical models that represent a unified approach to ecological research, thus taking the reader from design, through data collection, and into analyses using a very powerful way of synthesizing data. - Makes ecological modeling accessible to people who are struggling to use complex or advanced modeling programs - Synthesizes current ecological models and explains how they are inter-connected - Contains numerous examples throughout the book, walking the reading through scenarios with both real and simulated data - Provides an ideal resource for ecologists working in R software and in BUGS software for more flexible Bayesian analyses



Introduction To Winbugs For Ecologists


Introduction To Winbugs For Ecologists
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Author : Marc Kéry
language : en
Publisher: Academic Press
Release Date : 2010-07-19

Introduction To Winbugs For Ecologists written by Marc Kéry and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2010-07-19 with Science categories.


Introduction to WinBUGS for Ecologists introduces applied Bayesian modeling to ecologists using the highly acclaimed, free WinBUGS software. It offers an understanding of statistical models as abstract representations of the various processes that give rise to a data set. Such an understanding is basic to the development of inference models tailored to specific sampling and ecological scenarios. The book begins by presenting the advantages of a Bayesian approach to statistics and introducing the WinBUGS software. It reviews the four most common statistical distributions: the normal, the uniform, the binomial, and the Poisson. It describes the two different kinds of analysis of variance (ANOVA): one-way and two- or multiway. It looks at the general linear model, or ANCOVA, in R and WinBUGS. It introduces generalized linear model (GLM), i.e., the extension of the normal linear model to allow error distributions other than the normal. The GLM is then extended contain additional sources of random variation to become a generalized linear mixed model (GLMM) for a Poisson example and for a binomial example. The final two chapters showcase two fairly novel and nonstandard versions of a GLMM. The first is the site-occupancy model for species distributions; the second is the binomial (or N-) mixture model for estimation and modeling of abundance. - Introduction to the essential theories of key models used by ecologists - Complete juxtaposition of classical analyses in R and Bayesian analysis of the same models in WinBUGS - Provides every detail of R and WinBUGS code required to conduct all analyses - Companion Web Appendix that contains all code contained in the book and additional material (including more code and solutions to exercises)



Statistical Modeling With R


Statistical Modeling With R
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Author : Pablo Inchausti
language : en
Publisher: Oxford University Press
Release Date : 2023-01-16

Statistical Modeling With R written by Pablo Inchausti and has been published by Oxford University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-01-16 with Science categories.


To date, statistics has tended to be neatly divided into two theoretical approaches or frameworks: frequentist (or classical) and Bayesian. Scientists typically choose the statistical framework to analyse their data depending on the nature and complexity of the problem, and based on their personal views and prior training on probability and uncertainty. Although textbooks and courses should reflect and anticipate this dual reality, they rarely do so. This accessible textbook explains, discusses, and applies both the frequentist and Bayesian theoretical frameworks to fit the different types of statistical models that allow an analysis of the types of data most commonly gathered by life scientists. It presents the material in an informal, approachable, and progressive manner suitable for readers with only a basic knowledge of calculus and statistics. Statistical Modeling with R is aimed at senior undergraduate and graduate students, professional researchers, and practitioners throughout the life sciences, seeking to strengthen their understanding of quantitative methods and to apply them successfully to real world scenarios, whether in the fields of ecology, evolution, environmental studies, or computational biology.



Evidential Statistics Model Identification And Science


Evidential Statistics Model Identification And Science
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Author : Mark Louis Taper
language : en
Publisher: Frontiers Media SA
Release Date : 2022-02-15

Evidential Statistics Model Identification And Science written by Mark Louis Taper and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-02-15 with Science categories.




Spatio Temporal Models For Ecologists


Spatio Temporal Models For Ecologists
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Author : James Thorson
language : en
Publisher: CRC Press
Release Date : 2024-02-27

Spatio Temporal Models For Ecologists written by James Thorson and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-02-27 with Mathematics categories.


Ecological dynamics are tremendously complicated and are studied at a variety of spatial and temporal scales. Ecologists often simplify analysis by describing changes in density of individuals across a landscape, and statistical methods are advancing rapidly for studying spatio-temporal dynamics. However, spatio-temporal statistics is often presented using a set of principles that may seem very distant from ecological theory or practice. This book seeks to introduce a minimal set of principles and numerical techniques for spatio-temporal statistics that can be used to implement a wide range of real-world ecological analyses regarding animal movement, population dynamics, community composition, causal attribution, and spatial dynamics. We provide a step-by-step illustration of techniques that combine core spatial-analysis packages in R with low-level computation using Template Model Builder. Techniques are showcased using real-world data from varied ecological systems, providing a toolset for hierarchical modelling of spatio-temporal processes. Spatio-Temporal Models for Ecologists is meant for graduate level students, alongside applied and academic ecologists. Key Features: Foundational ecological principles and analyses Thoughtful and thorough ecological examples Analyses conducted using a minimal toolbox and fast computation Code using R and TMB included in the book and available online



Likelihood Methods In Biology And Ecology


Likelihood Methods In Biology And Ecology
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Author : Michael Brimacombe
language : en
Publisher: CRC Press
Release Date : 2018-12-18

Likelihood Methods In Biology And Ecology written by Michael Brimacombe and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-12-18 with Mathematics categories.


This book emphasizes the importance of the likelihood function in statistical theory and applications and discusses it in the context of biology and ecology. Bayesian and frequentist methods both use the likelihood function and provide differing but related insights. This is examined here both through review of basic methodology and also the integr



Bayesian Analysis For Population Ecology


Bayesian Analysis For Population Ecology
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Author : Ruth King
language : en
Publisher: CRC Press
Release Date : 2009-10-30

Bayesian Analysis For Population Ecology written by Ruth King and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009-10-30 with Mathematics categories.


Emphasizing model choice and model averaging, this book presents up-to-date Bayesian methods for analyzing complex ecological data. It provides a basic introduction to Bayesian methods that assumes no prior knowledge. The book includes detailed descriptions of methods that deal with covariate data and covers techniques at the forefront of research, such as model discrimination and model averaging. Leaders in the statistical ecology field, the authors apply the theory to a wide range of actual case studies and illustrate the methods using WinBUGS and R. The computer programs and full details of the data sets are available on the book's website.



Population Ecology In Practice


Population Ecology In Practice
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Author : Dennis L. Murray
language : en
Publisher: John Wiley & Sons
Release Date : 2020-02-10

Population Ecology In Practice written by Dennis L. Murray and has been published by John Wiley & Sons this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-02-10 with Science categories.


A synthesis of contemporary analytical and modeling approaches in population ecology The book provides an overview of the key analytical approaches that are currently used in demographic, genetic, and spatial analyses in population ecology. The chapters present current problems, introduce advances in analytical methods and models, and demonstrate the applications of quantitative methods to ecological data. The book covers new tools for designing robust field studies; estimation of abundance and demographic rates; matrix population models and analyses of population dynamics; and current approaches for genetic and spatial analysis. Each chapter is illustrated by empirical examples based on real datasets, with a companion website that offers online exercises and examples of computer code in the R statistical software platform. Fills a niche for a book that emphasizes applied aspects of population analysis Covers many of the current methods being used to analyse population dynamics and structure Illustrates the application of specific analytical methods through worked examples based on real datasets Offers readers the opportunity to work through examples or adapt the routines to their own datasets using computer code in the R statistical platform Population Ecology in Practice is an excellent book for upper-level undergraduate and graduate students taking courses in population ecology or ecological statistics, as well as established researchers needing a desktop reference for contemporary methods used to develop robust population assessments.



Real World Ecology


Real World Ecology
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Author : ShiLi Miao
language : en
Publisher: Springer Science & Business Media
Release Date : 2008-11-20

Real World Ecology written by ShiLi Miao and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2008-11-20 with Science categories.


Ecological and environmental research has increased in scope and complexity in the last few decades, from simple systems with a few managed variables to complex ecosystems with many uncontrolled variables. These issues encompass problems that are inadequately addressed using the types of carefully controlled experiments that dominate past ecological research. Contemporary challenges facing ecologists include whole ecosystem responses to planned restoration activities and ecosystem modifications, as well as unplanned catastrophic events such as biological invasions, natural disasters, and global climate changes. Major perturbations implicated in large-scale ecological alterations share important characteristics that challenge traditional experimental design and statistical analyses. These include: * Lack of randomization, replication and independence * Multiple scales of spatial and temporal variability * Complex interactions and system feedbacks. In real world ecology, standard replicated designs are often neither practical nor feasible for large-scale experiments, yet ecologists continue to cling to these same standard designs and related statistical analyses. Case studies that fully elucidate the currently available techniques for conducting large-scale unreplicated analyses are lacking. Real World Ecology: Large-Scale and Long-Term Case Studies and Methods is the first to focus on case studies to demonstrate how ecologists can investigate complex contemporary problems using new and powerful experimental approaches. This collection of case studies showcases innovative experimental designs, analytical options, and interpretation possibilities currently available to theoretical and applied ecologists, practitioners, and biostatisticians. By illustrating how scientists have answered pressing questions about ecosystem restoration, impact and recovery, global warming, conservation, modeling, and biological invasions, this book will broaden the acceptance and application of modern approaches by scientists and encourage further methodological development.