Bioinformatics In Rice Research
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Bioinformatics In Rice Research
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Author : Manoj Kumar Gupta
language : en
Publisher: Springer Nature
Release Date : 2021-09-24
Bioinformatics In Rice Research written by Manoj Kumar Gupta and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-09-24 with Science categories.
This book provides an up-to-date review of classic and advanced bioinformatics approaches and their utility in rice research. It summarizes databases and tools for analyzing DNA, proteins and gene expression profiles, mapping genetic variations, annotation of protein and RNA molecules, phylogenetic analysis, and pathway enrichment. In addition, it presents high-throughput technologies that are widely used to provide deep insights into the genetic architecture of important traits in the rice genome. The book subsequently discusses techniques for identifying RNA-protein, DNA-protein interactions, and molecular markers, including SNP and microsatellites, in the contexts of rice breeding and genetics. Lastly, it explores various tools that are used to identify and characterize non-coding RNA in rice and their potential role in rice research.
Applications Of Bioinformatics In Rice Research
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Author : Manoj Kumar Gupta
language : en
Publisher: Springer Nature
Release Date : 2021-09-24
Applications Of Bioinformatics In Rice Research written by Manoj Kumar Gupta and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-09-24 with Science categories.
This book summarizes the advanced computational methods for mapping high-density linkages and quantitative trait loci in the rice genome. It also discusses the tools for analyzing metabolomics, identifying complex polyploidy genomes, and decoding the extrachromosomal genome in rice. Further, the book highlights the application of CRISPR-Cas technology and methods for understanding the evolutionary development and the de novo evolution of genes in rice. Lastly, it discusses the role of artificial intelligence and machine learning in rice research and computational tools to analyze plant-pathogen co-evolution in rice crops.
Advances In Genetics Genomics And Control Of Rice Blast Disease
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Author : Xiaofan Wang
language : en
Publisher: Springer Science & Business Media
Release Date : 2009-03-01
Advances In Genetics Genomics And Control Of Rice Blast Disease written by Xiaofan Wang and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009-03-01 with Technology & Engineering categories.
Rice blast, caused by the fungal pathogen Magnaporthe grisea, is one of the most destructive rice diseases worldwide and destroys enough rice to feed more than 60 million people annually. Due to high variability of the fungal population in the field, frequent loss of resistance of newly-released rice cultivars is a major restraint in sustainable rice production. In the last few years, significant progress has been made in understanding the defense mechanism of rice and pathogenicity of the fungus. The rice blast system has become a model pathosystem for understanding the molecular basis of plant-fungal interactions due to the availability of both genomes of rice and M. grisea and a large collection of genetic resources. This book provides a complete review of the recent progress and achievements on genetic, genomic and disease control of the disease. Most of the chapters were presented at the 4th International Rice Blast Conference held on October 9-14, 2007 in Changsha, China. This book is a valuable reference not only for plant pathologists and breeders working on rice blast but also for those working on other pathysystems in crop plants.
Charting New Pathways To C4 Rice
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Author : J. E. Sheehy
language : en
Publisher: Int. Rice Res. Inst.
Release Date : 2007
Charting New Pathways To C4 Rice written by J. E. Sheehy and has been published by Int. Rice Res. Inst. this book supported file pdf, txt, epub, kindle and other format this book has been release on 2007 with Crop yields categories.
Setting the science; C4 rice fron theory to practice; Single-cell c4 systems; The background and how C4 rice can be delivered; Setting up the consortium.
A Holistic Approach To Rice Research And Genetic Engineering
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Author : Huanming Yang
language : en
Publisher: World Scientific
Release Date : 2003
A Holistic Approach To Rice Research And Genetic Engineering written by Huanming Yang and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 2003 with Science categories.
The aim of this book series is to familiarize scientists, students and the general public with exciting new discoveries and developments in rice genomics. Leading scientists in rice genomics and related fields are invited to write articles in a cohesive format that appeals to both researchers and laypersons with an interest in genomics and biotechnology. The first volume provides the background information and highlights the major achievements in rice genomics; ongoing developments in this exciting field are also discussed. This volume promotes genomics as a holistic approach to rice research and genetic engineering. The chief editor of the series is Prof Huanming Yang of the Beijing Genomics Institute. As one of the most distinguished scientists in rice research today, Prof Yang led a team of researchers who successfully sequenced and analyzed the draft sequence of the indica rice subspecies. In Vol 1 of the series, he co-authors an article entitled ?An International Campaign for Agricultural and Livestock Genomics?.
Bioinformatics
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Author : Andrzej Polanski
language : en
Publisher: Springer Science & Business Media
Release Date : 2007-05-11
Bioinformatics written by Andrzej Polanski and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2007-05-11 with Computers categories.
Bioinformatics as a discipline arose out of the need to introduce order into the massive data sets produced by the new technologies of molecular biology: large-scale DNA sequencing, measurements of RNA concentrations in multiple gene expression arrays, and new profiling techniques in proteomics. As such, bioinformatics integrates a number of traditional quantitative sciences such as mathematics, statistics, computer science and cybernetics with biological sciences such as genetics, genomics, proteomics and molecular evolution. In this comprehensive textbook, Polanski and Kimmel present mathematical models in bioinformatics and they describe the biological problems that inspire the computer science tools used to handle the enormous data sets involved. The first part of the book covers the mathematical and computational methods, while the practical applications are presented in the second part. The mathematical presentation is descriptive and avoids unnecessary formalism, and yet remains clear and precise. Emphasis is laid on motivation through biological problems and cross applications. Each of the four chapters in the first part is accompanied by exercises and problems to support an understanding of the techniques presented. Each of the six chapters of the second part is devoted to some specific application domain: sequence alignment, molecular phylogenetics and coalescence theory, genomics, proteomics, RNA, and DNA microarrays. Each chapter concludes with a problems and projects section, to deepen the reader's understanding and to allow for the design of derived methods. Many of the projects involve publicly available software and/or Web-based bioinformatics depositories. Finally, the book closes with a thorough bibliography, reaching from classic research results to very recent findings, providing many pointers for future research.Overall, this volume is ideally suited for a senior undergraduate or graduate course on bioinformatics, with a strong focuson its mathematical and computer science background.
The Role Of Bioinformatics In Agriculture
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Author : Santosh Kumar
language : en
Publisher: CRC Press
Release Date : 2014-02-14
The Role Of Bioinformatics In Agriculture written by Santosh Kumar and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-02-14 with Science categories.
This title includes a number of Open Access chapters. Advances in information technology and next generation sequencing have propelled the use of bioinformatics in agriculture, especially in the area of crop improvement. An extremely large amount of genomics data is available from plants and animals due to tremendous improvements in the field. This book acquaints readers with state-of-the-art sequencing technologies, recent developments in computing algorithms, and certain biological perspectives that influence development of bioinformatics tools by giving specific examples from model plant species. The challenge is now to make sense and use of this wealth of data.
Rice Genetics V
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Author : Darshan S. Brar
language : en
Publisher: World Scientific
Release Date : 2007
Rice Genetics V written by Darshan S. Brar and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 2007 with Science categories.
This volume is a collection of the papers presented at the Fifth IRGS in 2005. It reports the latest developments in the field and includes research on breeding, mapping of genes and quantitative trait loci, identification and cloning of cndidate genesfor biotic and abiotic stresses, gene expression, as well as genomic databases and mutant induction for functional genomics
Rice Protocols
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Author : Yinong Yang
language : en
Publisher: Humana Press
Release Date : 2012-11-08
Rice Protocols written by Yinong Yang and has been published by Humana Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2012-11-08 with Science categories.
With the completion of a finished rice genome sequence, increasing efforts have focused on functional characterization of rice genes, elucidation of the underlying mechanisms involved in major agronomic traits (e.g., high yield, grain quality, abiotic stress tolerance, and disease resistance), and the subsequent translation of genomic knowledge into agricultural productivity via molecular breeding and improved cultural practice. To meet increasing interest in this field, Rice Protocols has been compiled to provide a series of core techniques and approaches commonly used in studying rice molecular biology and functional genomics. These approaches include genetic and molecular techniques such as artificial hybridization, fluorescence in situ hybridization, generation and characterization of chemical and T-DNA insertional mutants, quantitative trait loci (QTLs) analysis and map-based cloning, site-specific transgene integration, and artificial microRNA-mediated gene silencing, along with a variety of “omics” techniques. Written in the highly successful Methods in Molecular BiologyTM series format, chapters include introductions to their respective topics, lists of the necessary materials and reagents, step-by-step, readily reproducible laboratory protocols, and tips on troubleshooting and avoiding known pitfalls. Authoritative and easy to use, Rice Protocols will prove useful for both beginners and experienced researchers whether they are molecular biologists who want to study rice plants or rice researchers who are interested in learning molecular techniques.
Advances In Rice Research For Abiotic Stress Tolerance
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Author : Mirza Hasanuzzaman
language : en
Publisher: Woodhead Publishing
Release Date : 2018-11-12
Advances In Rice Research For Abiotic Stress Tolerance written by Mirza Hasanuzzaman and has been published by Woodhead Publishing this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-11-12 with Science categories.
Advances in Rice Research for Abiotic Stress Tolerance provides an important guide to recognizing, assessing and addressing the broad range of environmental factors that can inhibit rice yield. As a staple food for nearly half of the world's population, and in light of projected population growth, improving and increasing rice yield is imperative. This book presents current research on abiotic stresses including extreme temperature variance, drought, hypoxia, salinity, heavy metal, nutrient deficiency and toxicity stresses. Going further, it identifies a variety of approaches to alleviate the damaging effects and improving the stress tolerance of rice. Advances in Rice Research for Abiotic Stress Tolerance provides an important reference for those ensuring optimal yields from this globally important food crop. - Covers aspects of abiotic stress, from research, history, practical field problems faced by rice, and the possible remedies to the adverse effects of abiotic stresses - Provides practical insights into a wide range of management and crop improvement practices - Presents a valuable, single-volume sourcebook for rice scientists dealing with agronomy, physiology, molecular biology and biotechnology