Combinatorics Of Genome Rearrangements
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Combinatorics Of Genome Rearrangements
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Author : Guillaume Fertin
language : en
Publisher: MIT Press
Release Date : 2009
Combinatorics Of Genome Rearrangements written by Guillaume Fertin and has been published by MIT Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009 with Combinatorial analysis categories.
A comprehensive survey of a rapidly expanding field of combinatorial optimization, mathematically oriented but offering biological explanations when required. From one cell to another, from one individual to another, and from one species to another, the content of DNA molecules is often similar. The organization of these molecules, however, differs dramatically, and the mutations that affect this organization are known as genome rearrangements. Combinatorial methods are used to reconstruct putative rearrangement scenarios in order to explain the evolutionary history of a set of species, often formalizing the evolutionary events that can explain the multiple combinations of observed genomes as combinatorial optimization problems. This book offers the first comprehensive survey of this rapidly expanding application of combinatorial optimization. It can be used as a reference for experienced researchers or as an introductory text for a broader audience. Genome rearrangement problems have proved so interesting from a combinatorial point of view that the field now belongs as much to mathematics as to biology. This book takes a mathematically oriented approach, but provides biological background when necessary. It presents a series of models, beginning with the simplest (which is progressively extended by dropping restrictions), each constructing a genome rearrangement problem. The book also discusses an important generalization of the basic problem known as the median problem, surveys attempts to reconstruct the relationships between genomes with phylogenetic trees, and offers a collection of summaries and appendixes with useful additional information.
Combinatorics Of Genome Rearrangements
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Author :
language : en
Publisher:
Release Date : 2009
Combinatorics Of Genome Rearrangements written by and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009 with Combinatorial analysis categories.
A comprehensive survey of a rapidly expanding field of combinatorial optimization, mathematically orientated but offering biological explanations when required, this volume offers the first comprehensive survey of a rapidly expanding application of combinatorial optimization.
Combinatorics Of Genome Rearrangements And Phylogeny
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Author : Niklas Eriksen
language : en
Publisher:
Release Date : 2001
Combinatorics Of Genome Rearrangements And Phylogeny written by Niklas Eriksen and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2001 with categories.
Combinatorial Pattern Matching
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Author : Ferdinando Cicalese
language : en
Publisher: Springer
Release Date : 2015-06-15
Combinatorial Pattern Matching written by Ferdinando Cicalese and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-06-15 with Computers categories.
This book constitutes the refereed proceedings of the 26th Annual Symposium on Combinatorial Pattern Matching, CPM 2015, held on Ischia Island, Italy, in June/July 2015. The 34 revised full papers presented together with 3 invited talks were carefully reviewed and selected from 83 submissions. The papers address issues of searching and matching strings and more complicated patterns such as trees; regular expressions; graphs; point sets; and arrays. The goal is to derive combinatorial properties of such structures and to exploit these properties in order to achieve superior performance for the corresponding computational problems. The meeting also deals with problems in computational biology; data compression and data mining; coding; information retrieval; natural language processing; and pattern recognition.
Combinatorial Pattern Matching
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Author : Alexander S. Kulikov
language : en
Publisher: Springer
Release Date : 2014-06-12
Combinatorial Pattern Matching written by Alexander S. Kulikov and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-06-12 with Computers categories.
This book constitutes the refereed proceedings of the 25th Annual Symposium on Combinatorial Pattern Matching, CPM 2014, held in Moscow, Russia, in June 2014. The 28 revised full papers presented together with 5 invited talks were carefully reviewed and selected from 54 submissions. The papers address issues of searching and matching strings and more complicated patterns such as trees; regular expressions; graphs; point sets; and arrays. The goal is to derive combinatorial properties of such structures and to exploit these properties in order to achieve superior performance for the corresponding computational problems. The meeting also deals with problems in computational biology; data compression and data mining; coding; information retrieval; natural language processing; and pattern recognition.
Computing And Combinatorics
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Author : Weili Wu
language : en
Publisher: Springer Nature
Release Date : 2023-12-08
Computing And Combinatorics written by Weili Wu and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-12-08 with Computers categories.
This two volume set volume LNCS 14422-14423 constitutes the refereed proceedings of the 29th International Conference, COCOON 2023, held in Hawaii, HI, USA, during December 2023. The 60 full papers were carefully reviewed and selected from 146 submissions. They are organized in the following topical sections: Part I : Combinatorics and Algorithms; Algorithmic Solution in Applications; and Algorithm in Networks. Part II: Complexity and Approximation; Graph Algorithms; and Applied Algorithms.
Algorithms For Computational Biology
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Author : Adrian-Horia Dediu
language : en
Publisher: Springer
Release Date : 2014-06-07
Algorithms For Computational Biology written by Adrian-Horia Dediu and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-06-07 with Computers categories.
This book constitutes the refereed proceedings of the First International Conference, AlCoB 2014, held in July 2014 in Tarragona, Spain. The 20 revised full papers were carefully reviewed and selected from 39 submissions. The scope of AlCoB includes topics of either theoretical or applied interest, namely: exact sequence analysis, approximate sequence analysis, pairwise sequence alignment, multiple sequence alignment, sequence assembly, genome rearrangement, regulatory motif finding, phylogeny reconstruction, phylogeny comparison, structure prediction, proteomics: molecular pathways, interaction networks, transcriptomics: splicing variants, isoform inference and quantification, differential analysis, next-generation sequencing: population genomics, metagenomics, metatranscriptomics, microbiome analysis, systems biology.
Research In Computational Molecular Biology
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Author : Mona Singh
language : en
Publisher: Springer
Release Date : 2016-04-08
Research In Computational Molecular Biology written by Mona Singh and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-04-08 with Computers categories.
This book constitutes the proceedings of the 20th Annual Conference on Research in Computational Molecular Biology, RECOMB 2016, held in Santa Monica, CA, USA, in April 2016. The 15 regular papers presented in this volume were carefully reviewed and selected from 172 submissions. 20 short abstracts are included in the back matter of the volume. They report on original research in all areas of computational molecular biology and bioinformatics.
Models And Methods For Biological Evolution
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Author : Gilles Didier
language : en
Publisher: John Wiley & Sons
Release Date : 2024-04-10
Models And Methods For Biological Evolution written by Gilles Didier and has been published by John Wiley & Sons this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-04-10 with Science categories.
Biological evolution is the phenomenon concerning how species are born, are transformed or disappear over time. Its study relies on sophisticated methods that involve both mathematical modeling of the biological processes at play and the design of efficient algorithms to fit these models to genetic and morphological data. Models and Methods for Biological Evolution outlines the main methods to study evolution and provides a broad overview illustrating the variety of formal approaches used, notably including combinatorial optimization, stochastic models and statistical inference techniques. Some of the most relevant applications of these methods are detailed, concerning, for example, the study of migratory events of ancient human populations or the progression of epidemics. This book should thus be of interest to applied mathematicians interested in central problems in biology, and to biologists eager to get a deeper understanding of widely used techniques of evolutionary data analysis.
Combinatorial Pattern Matching
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Author : Maxime Crochemore
language : en
Publisher: Springer
Release Date : 2003-05-21
Combinatorial Pattern Matching written by Maxime Crochemore and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2003-05-21 with Computers categories.
This book constitutes the refereed proceedings of the 10th Annual Symposium on Combinatorial Pattern Matching, CPM 99, held in Warwick, UK in July 1999. The 21 revised papers presented were carefully reviewed and selected from 26 submissions. The papers address all current issues in combinatorial pattern matching dealing with a variety of classical objects like trees, regular expressions, graphs, point sets, and arrays as well as with DNA/RNA coding, WWW issues, information retrieval, data compression, and pattern recognition.