Combinatorics Of Genome Rearrangements
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Combinatorics Of Genome Rearrangements
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Author : Guillaume Fertin
language : en
Publisher: MIT Press
Release Date : 2009
Combinatorics Of Genome Rearrangements written by Guillaume Fertin and has been published by MIT Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009 with Combinatorial analysis categories.
A comprehensive survey of a rapidly expanding field of combinatorial optimization, mathematically oriented but offering biological explanations when required. From one cell to another, from one individual to another, and from one species to another, the content of DNA molecules is often similar. The organization of these molecules, however, differs dramatically, and the mutations that affect this organization are known as genome rearrangements. Combinatorial methods are used to reconstruct putative rearrangement scenarios in order to explain the evolutionary history of a set of species, often formalizing the evolutionary events that can explain the multiple combinations of observed genomes as combinatorial optimization problems. This book offers the first comprehensive survey of this rapidly expanding application of combinatorial optimization. It can be used as a reference for experienced researchers or as an introductory text for a broader audience. Genome rearrangement problems have proved so interesting from a combinatorial point of view that the field now belongs as much to mathematics as to biology. This book takes a mathematically oriented approach, but provides biological background when necessary. It presents a series of models, beginning with the simplest (which is progressively extended by dropping restrictions), each constructing a genome rearrangement problem. The book also discusses an important generalization of the basic problem known as the median problem, surveys attempts to reconstruct the relationships between genomes with phylogenetic trees, and offers a collection of summaries and appendixes with useful additional information.
Combinatorics Of Genome Rearrangements
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Author :
language : en
Publisher:
Release Date : 2009
Combinatorics Of Genome Rearrangements written by and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009 with Combinatorial analysis categories.
A comprehensive survey of a rapidly expanding field of combinatorial optimization, mathematically orientated but offering biological explanations when required, this volume offers the first comprehensive survey of a rapidly expanding application of combinatorial optimization.
Comparative Genomics
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Author : Eric Tannier
language : en
Publisher: Springer
Release Date : 2010-10-13
Comparative Genomics written by Eric Tannier and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2010-10-13 with Science categories.
The complexity of genome evolution has given birth to exciting challenges for computational biologists. A various range of algorithmic, statistical, mathem- ical techniques to elucidate the histories of molecules are developed each year and many are presented at the RECOMB satellite workshop on Comparative Genomics. It is a place where scientists working on all aspects of comparative genomics can share ideas on the development of tools and their application to relevant questions. This volume contains the papers presented at RECOMB-CG 2010, held on October 9–11 in Ottawa. The ?eld is still ?ourishing as seen from the papers presented this year: many developments enrich the combinatorics of genome rearrangements, while gene order phylogenies are becoming more and more - curate, thanks to a mixing of combinatorial and statistical principles, associated with rapid and thoughtful heuristics. Several papers tend to re?ne the models of genome evolution, and more and more genomic events can be modeled, from single nucleotide substitutions in whole genome alignments to large structural mutations or horizontal gene transfers.
Combinatorial Pattern Matching
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Author : Ferdinando Cicalese
language : en
Publisher: Springer
Release Date : 2015-06-15
Combinatorial Pattern Matching written by Ferdinando Cicalese and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-06-15 with Computers categories.
This book constitutes the refereed proceedings of the 26th Annual Symposium on Combinatorial Pattern Matching, CPM 2015, held on Ischia Island, Italy, in June/July 2015. The 34 revised full papers presented together with 3 invited talks were carefully reviewed and selected from 83 submissions. The papers address issues of searching and matching strings and more complicated patterns such as trees; regular expressions; graphs; point sets; and arrays. The goal is to derive combinatorial properties of such structures and to exploit these properties in order to achieve superior performance for the corresponding computational problems. The meeting also deals with problems in computational biology; data compression and data mining; coding; information retrieval; natural language processing; and pattern recognition.
Algebraic And Combinatorial Computational Biology
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Author : Raina Robeva
language : en
Publisher: Academic Press
Release Date : 2018-10-08
Algebraic And Combinatorial Computational Biology written by Raina Robeva and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-10-08 with Mathematics categories.
Algebraic and Combinatorial Computational Biology introduces students and researchers to a panorama of powerful and current methods for mathematical problem-solving in modern computational biology. Presented in a modular format, each topic introduces the biological foundations of the field, covers specialized mathematical theory, and concludes by highlighting connections with ongoing research, particularly open questions. The work addresses problems from gene regulation, neuroscience, phylogenetics, molecular networks, assembly and folding of biomolecular structures, and the use of clustering methods in biology. A number of these chapters are surveys of new topics that have not been previously compiled into one unified source. These topics were selected because they highlight the use of technique from algebra and combinatorics that are becoming mainstream in the life sciences. Integrates a comprehensive selection of tools from computational biology into educational or research programs Emphasizes practical problem-solving through multiple exercises, projects and spinoff computational simulations Contains scalable material for use in undergraduate and graduate-level classes and research projects Introduces the reader to freely-available professional software Supported by illustrative datasets and adaptable computer code
Computing And Combinatorics
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Author : Ding-Zhu Du
language : en
Publisher: Springer
Release Date : 2013-05-17
Computing And Combinatorics written by Ding-Zhu Du and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2013-05-17 with Computers categories.
This book constitutes the refereed proceedings of the 19th International Conference on Computing and Combinatorics, COCOON 2013, held in Hangzhou, China, in June 2013. The 56 revised full papers presented were carefully reviewed and selected from 120 submissions. There was a co-organized workshop on discrete algorithms of which 8 short papers were accepted and a workshop on computational social networks where 12 papers out of 25 submissions were accepted.
Computing And Combinatorics
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Author : Zhipeng Cai
language : en
Publisher: Springer
Release Date : 2014-07-05
Computing And Combinatorics written by Zhipeng Cai and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-07-05 with Computers categories.
This book constitutes the refereed proceedings of the 20th International Conference on Computing and Combinatorics, COCOON 2014, held in Atlanta, GA, USA, in August 2014. The 51 revised full papers presented were carefully reviewed and selected from 110 submissions. There was a co-organized workshop on computational social networks (CSoNet 2014) where 8 papers were accepted. The papers cover the following topics: sampling and randomized methods; logic, algebra and automata; database and data structures; parameterized complexity and algorithms; computational complexity; computational biology and computational geometry; approximation algorithm; graph theory and algorithms; game theory and cryptography; scheduling algorithms and circuit complexity and CSoNet.
Computing And Combinatorics
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Author : Tandy Warnow
language : en
Publisher: Springer Science & Business Media
Release Date : 2003-07-09
Computing And Combinatorics written by Tandy Warnow and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2003-07-09 with Computers categories.
The papers in this volume were presented at the 9th Annual International C- puting and Combinatorics Conference (COCOON 2003), held July 25–28, 2003, in Big Sky, MT, USA. The topics cover most aspects of theoretical computer science and combinatorics related to computing. Submissionstotheconferencethisyearwereconductedelectronically.Atotal of 114 papers were submitted, of which 52 were accepted. The papers were evaluated by an international program committee consisting of Nina Amenta, Tetsuo Asano, Bernard Chazelle, Zhixiang Chen, Francis Chin, Kyung-Yong Chwa, Robert Cimikowski, Anne Condon, Michael Fellows, Anna Gal, Michael Hallett,DanielHuson,NaokiKatoh,D.T.Lee,BernardMoret,BrendanMumey, Gene Myers, Hung Quang Ngo, Takao Nishizeki, Cindy Phillips, David Sanko?, Denbigh Starkey, Jie Wang, Lusheng Wang, Tandy Warnow and Binhai Zhu. It is expected that most of the accepted papers will appear in a more complete form in scienti?c journals. The submitted papers were from Canada (6), China (7), Estonia (1), F- land (1), France (1), Germany (8), Israel (4), Italy (1), Japan (11), Korea (22), Kuwait (1), New Zealand (1), Singapore (2), Spain (1), Sweden (2), Switzerland (3), Taiwan (7), the UK (1) and the USA (34). Each paper was evaluated by at least three Program Committee members, assisted in some cases by subre- rees. In addition to selected papers, the conference also included three invited presentations by Jon Bentley, Dan Gus?eld and Joel Spencer.
Combinatorial Pattern Matching
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Author : Alexander S. Kulikov
language : en
Publisher: Springer
Release Date : 2014-06-12
Combinatorial Pattern Matching written by Alexander S. Kulikov and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-06-12 with Computers categories.
This book constitutes the refereed proceedings of the 25th Annual Symposium on Combinatorial Pattern Matching, CPM 2014, held in Moscow, Russia, in June 2014. The 28 revised full papers presented together with 5 invited talks were carefully reviewed and selected from 54 submissions. The papers address issues of searching and matching strings and more complicated patterns such as trees; regular expressions; graphs; point sets; and arrays. The goal is to derive combinatorial properties of such structures and to exploit these properties in order to achieve superior performance for the corresponding computational problems. The meeting also deals with problems in computational biology; data compression and data mining; coding; information retrieval; natural language processing; and pattern recognition.
The Double Cut And Join Operation And Its Applications To Genome Rearrangements
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Author : Julia Zakotnik
language : en
Publisher:
Release Date : 2008
The Double Cut And Join Operation And Its Applications To Genome Rearrangements written by Julia Zakotnik and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2008 with categories.