Computational Genomic Signatures And Metagenomics
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Computational Genomic Signatures
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Author : Ozkan Ufuk Nalbantoglu
language : en
Publisher: Springer Nature
Release Date : 2022-06-01
Computational Genomic Signatures written by Ozkan Ufuk Nalbantoglu and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-06-01 with Technology & Engineering categories.
Recent advances in development of sequencing technology has resulted in a deluge of genomic data. In order to make sense of this data, there is an urgent need for algorithms for data processing and quantitative reasoning. An emerging in silico approach, called computational genomic signatures, addresses this need by representing global species-specific features of genomes using simple mathematical models. This text introduces the general concept of computational genomic signatures, and it reviews some of the DNA sequence models which can be used as computational genomic signatures. The text takes the position that a practical computational genomic signature consists of both a model and a measure for computing the distance or similarity between models. Therefore, a discussion of sequence similarity/distance measurement in the context of computational genomic signatures is presented. The remainder of the text covers various applications of computational genomic signatures in the areas of metagenomics, phylogenetics and the detection of horizontal gene transfer. Table of Contents: Genome Signatures, Definition and Background / Other Computational Characterizations as Genome Signatures / Measuring Distance of Biological Sequences Using Genome Signatures / Applications: Phylogeny Construction / Applications: Metagenomics / Applications: Horizontal DNA Transfer Detection
Computational Genomic Signatures And Metagenomics
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Author : Ozkan Ufuk Nalbantoglu
language : en
Publisher:
Release Date : 2011
Computational Genomic Signatures And Metagenomics written by Ozkan Ufuk Nalbantoglu and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2011 with Computational biology categories.
Introduction To Computational Metagenomics
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Author : Zhong Wang
language : en
Publisher: World Scientific
Release Date : 2022-04-11
Introduction To Computational Metagenomics written by Zhong Wang and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-04-11 with Science categories.
Breakthroughs in high-throughput genome sequencing and high-performance computing technologies have empowered scientists to decode many genomes including our own. Now they have a bigger ambition: to fully understand the vast diversity of microbial communities within us and around us, and to exploit their potential for the improvement of our health and environment. In this new field called metagenomics, microbial genomes are sequenced directly from the habitats without lab cultivation. Computational metagenomics, however, faces both a data challenge that deals with tens of tera-bases of sequences and an algorithmic one that deals with the complexity of thousands of species and their interactions.This interdisciplinary book is essential reading for those who are interested in beginning their own journey in computational metagenomics. It is a prism to look through various intricate computational metagenomics problems and unravel their three distinctive aspects: metagenomics, data engineering, and algorithms. Graduate students and advanced undergraduates from genomics science or computer science fields will find that the concepts explained in this book can serve as stepping stones for more advanced topics, while metagenomics practitioners and researchers from similar disciplines may use it to broaden their knowledge or identify new research targets.
Computational Intelligence For Genomics Data
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Author : Babita Pandey
language : en
Publisher: Elsevier
Release Date : 2025-01-21
Computational Intelligence For Genomics Data written by Babita Pandey and has been published by Elsevier this book supported file pdf, txt, epub, kindle and other format this book has been release on 2025-01-21 with Computers categories.
Computational Intelligence for Genomics Data presents an overview of machine learning and deep learning techniques being developed for the analysis of genomic data and the development of disease prediction models. The book focuses on machine and deep learning techniques applied to dimensionality reduction, feature extraction, and expressive gene selection. It includes designs, algorithms, and simulations on MATLAB and Python for larger prediction models and explores the possibilities of software and hardware-based applications and devices for genomic disease prediction. With the inclusion of important case studies and examples, this book will be a helpful resource for researchers, graduate students, and professional engineers. - Provides comparative analysis of machine learning and deep learning methods in the analysis of genomic data, discussing major design challenges, best practices, pitfalls, and research potential - Explores machine and deep learning techniques applied to dimensionality reduction, feature extraction, data selection, and their application in genomics - Presents case studies of various diseases based on gene microarray expression data, including cancer, liver disorders, neuromuscular disorders, and neurodegenerative disorders
Statistical And Computational Methods For Microbiome Multi Omics Data
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Author : Himel Mallick
language : en
Publisher: Frontiers Media SA
Release Date : 2020-11-19
Statistical And Computational Methods For Microbiome Multi Omics Data written by Himel Mallick and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-11-19 with Science categories.
This eBook is a collection of articles from a Frontiers Research Topic. Frontiers Research Topics are very popular trademarks of the Frontiers Journals Series: they are collections of at least ten articles, all centered on a particular subject. With their unique mix of varied contributions from Original Research to Review Articles, Frontiers Research Topics unify the most influential researchers, the latest key findings and historical advances in a hot research area! Find out more on how to host your own Frontiers Research Topic or contribute to one as an author by contacting the Frontiers Editorial Office: frontiersin.org/about/contact.
Computational Methods For Microbiome Analysis
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Author : Joao Carlos Setubal
language : en
Publisher: Frontiers Media SA
Release Date : 2021-02-02
Computational Methods For Microbiome Analysis written by Joao Carlos Setubal and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-02-02 with Science categories.
Computational Genomic Signatures
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Author : Ozkan Ufuk Nalbantoglu
language : en
Publisher: Morgan & Claypool Publishers
Release Date : 2011
Computational Genomic Signatures written by Ozkan Ufuk Nalbantoglu and has been published by Morgan & Claypool Publishers this book supported file pdf, txt, epub, kindle and other format this book has been release on 2011 with Computers categories.
This text introduces the general concept of computational genomic signatures, and it reviews some of the DNA sequence models which can be used as computational genomic signatures. The text takes the position that a practical computational genomic signature consists of both a model and a measure for computing the distance or similarity between models. Therefore, a discussion of sequence similarity/distance measurement in the context of computational genomic signatures is presented.
Computational Predictions Dynamic Tracking And Evolutionary Analysis Of Antibiotic Resistance Through The Mining Of Microbial Genomes And Metagenomic Data
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Author : Qi Zhao
language : en
Publisher: Frontiers Media SA
Release Date : 2022-04-27
Computational Predictions Dynamic Tracking And Evolutionary Analysis Of Antibiotic Resistance Through The Mining Of Microbial Genomes And Metagenomic Data written by Qi Zhao and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-04-27 with Science categories.
Algorithms For Computational Biology
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Author : Adrian-Horia Dediu
language : en
Publisher: Springer
Release Date : 2014-06-07
Algorithms For Computational Biology written by Adrian-Horia Dediu and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-06-07 with Computers categories.
This book constitutes the refereed proceedings of the First International Conference, AlCoB 2014, held in July 2014 in Tarragona, Spain. The 20 revised full papers were carefully reviewed and selected from 39 submissions. The scope of AlCoB includes topics of either theoretical or applied interest, namely: exact sequence analysis, approximate sequence analysis, pairwise sequence alignment, multiple sequence alignment, sequence assembly, genome rearrangement, regulatory motif finding, phylogeny reconstruction, phylogeny comparison, structure prediction, proteomics: molecular pathways, interaction networks, transcriptomics: splicing variants, isoform inference and quantification, differential analysis, next-generation sequencing: population genomics, metagenomics, metatranscriptomics, microbiome analysis, systems biology.
Advances In Bioinformatics And Computational Biology
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Author : Luis Kowada
language : en
Publisher: Springer Nature
Release Date : 2020-04-28
Advances In Bioinformatics And Computational Biology written by Luis Kowada and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-04-28 with Computers categories.
This book constitutes the refereed proceedings of the Brazilian Symposium on Bioinformatics, BSB 2019, held in Fortaleza, Brazil in October 2019. The 9 revised full papers and 3 short papers were carefully reviewed and selected from 22 submissions. The papers address a broad range of current topics in computational biology and bioinformatics.