Introduction To Computational Metagenomics
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Introduction To Computational Metagenomics
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Author : Zhong Wang
language : en
Publisher: World Scientific
Release Date : 2022-04-11
Introduction To Computational Metagenomics written by Zhong Wang and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-04-11 with Science categories.
Breakthroughs in high-throughput genome sequencing and high-performance computing technologies have empowered scientists to decode many genomes including our own. Now they have a bigger ambition: to fully understand the vast diversity of microbial communities within us and around us, and to exploit their potential for the improvement of our health and environment. In this new field called metagenomics, microbial genomes are sequenced directly from the habitats without lab cultivation. Computational metagenomics, however, faces both a data challenge that deals with tens of tera-bases of sequences and an algorithmic one that deals with the complexity of thousands of species and their interactions.This interdisciplinary book is essential reading for those who are interested in beginning their own journey in computational metagenomics. It is a prism to look through various intricate computational metagenomics problems and unravel their three distinctive aspects: metagenomics, data engineering, and algorithms. Graduate students and advanced undergraduates from genomics science or computer science fields will find that the concepts explained in this book can serve as stepping stones for more advanced topics, while metagenomics practitioners and researchers from similar disciplines may use it to broaden their knowledge or identify new research targets.
Computational Genomics With R
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Author : Altuna Akalin
language : en
Publisher: CRC Press
Release Date : 2020-12-16
Computational Genomics With R written by Altuna Akalin and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-12-16 with Mathematics categories.
Computational Genomics with R provides a starting point for beginners in genomic data analysis and also guides more advanced practitioners to sophisticated data analysis techniques in genomics. The book covers topics from R programming, to machine learning and statistics, to the latest genomic data analysis techniques. The text provides accessible information and explanations, always with the genomics context in the background. This also contains practical and well-documented examples in R so readers can analyze their data by simply reusing the code presented. As the field of computational genomics is interdisciplinary, it requires different starting points for people with different backgrounds. For example, a biologist might skip sections on basic genome biology and start with R programming, whereas a computer scientist might want to start with genome biology. After reading: You will have the basics of R and be able to dive right into specialized uses of R for computational genomics such as using Bioconductor packages. You will be familiar with statistics, supervised and unsupervised learning techniques that are important in data modeling, and exploratory analysis of high-dimensional data. You will understand genomic intervals and operations on them that are used for tasks such as aligned read counting and genomic feature annotation. You will know the basics of processing and quality checking high-throughput sequencing data. You will be able to do sequence analysis, such as calculating GC content for parts of a genome or finding transcription factor binding sites. You will know about visualization techniques used in genomics, such as heatmaps, meta-gene plots, and genomic track visualization. You will be familiar with analysis of different high-throughput sequencing data sets, such as RNA-seq, ChIP-seq, and BS-seq. You will know basic techniques for integrating and interpreting multi-omics datasets. Altuna Akalin is a group leader and head of the Bioinformatics and Omics Data Science Platform at the Berlin Institute of Medical Systems Biology, Max Delbrück Center, Berlin. He has been developing computational methods for analyzing and integrating large-scale genomics data sets since 2002. He has published an extensive body of work in this area. The framework for this book grew out of the yearly computational genomics courses he has been organizing and teaching since 2015.
Metagenomics For Microbiology
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Author : Jacques Izard
language : en
Publisher: Academic Press
Release Date : 2025-09-01
Metagenomics For Microbiology written by Jacques Izard and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2025-09-01 with Science categories.
Metagenomics for Microbiology, Second Edition unveils the intricate and diverse world of microbial communities, emphasizing their critical roles in health, disease, and ecosystem functionality. This updated edition addresses the significant challenges in the field and introduces promising approaches to make metagenomics research more feasible. Through comprehensive revisions and over five new chapters, readers are equipped with the latest research data and analyses, advancing their understanding of microbial principles. Notably, this edition provides a robust foundation for the design and analysis of omics studies, focusing on technological underpinnings and practical applications. It remains an essential resource for characterizing microbial consortia. - Describes updated methodologies with best-practice prescription, from sample to data analysis, for current metagenomic studies - Updates on sample preparation, data production, data clean up, data analysis, statistics, and experimental biology, with accompanying descriptions - Includes a new chapter on long read applications using Nanopore technology - Provides a new chapter on probability distributions that underpin the structure of microbiome ecosystems - Covers bio surveillance of diseases and biodefense
Guide To The Umbral Calculus A Different Mathematical Language
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Author : Silvia Licciardi
language : en
Publisher: World Scientific
Release Date : 2022-06-14
Guide To The Umbral Calculus A Different Mathematical Language written by Silvia Licciardi and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-06-14 with Science categories.
This book covers different aspects of umbral calculus and of its more recent developments. It discusses the technical details in depth, including its relevant applications. The book has therefore manyfold scopes to introduce a mathematical tool, not widespread known as it should be; to present a complete account of the relevant capabilities through the use of different examples of applications; to provide a formal bridge between different fields of research in pure and applied.
Metagenomics
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Author : Muniyandi Nagarajan
language : en
Publisher: Academic Press
Release Date : 2022-12-15
Metagenomics written by Muniyandi Nagarajan and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-12-15 with Science categories.
Metagenomics: Perspectives, Methods, and Applications, Second Edition provides thorough coverage of the growing field of metagenomics. Chapters from international experts examine methods for metagenomic analysis of microbiota, metagenomic computational tools, and recent metagenomic studies in various environments and clinical settings. This emphasis on applications makes the text particularly useful for applied researchers, practitioners, clinicians and students seeking to employ metagenomic approaches to advance knowledge in the biomedical and life sciences. Case-study based application chapters include topics ranging from viral metagenome profiling, metagenomics in oral disease and health, metagenomic insights into the human gut microbiome and metabolic syndromes, and more. This new edition has been fully updated to address the rapid growth and development of metagenomics applications that are discussed by experts who detail recent developments and fresh case studies. Newly added chapters instruct in methods and implications of metagenomics in areas of growing focus, such as microbiome research, clinical diagnosis, metagenomic epidemiology, wildlife conservation, zoonotic diseases and plant microbe interaction. Features a diverse range of chapters from international experts Highlights the current state-of-the-art and recent advances in the field, along with current perspectives and case studies Includes methods, techniques and various computational software tools and pipelines currently used in metagenomic studies Provokes new thought and motivations for continued study, with next steps in research discussed at the end of each chapter
Computational Science Iccs 2022
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Author : Derek Groen
language : en
Publisher: Springer Nature
Release Date : 2022-06-21
Computational Science Iccs 2022 written by Derek Groen and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022-06-21 with Computers categories.
The four-volume set LNCS 13350, 13351, 13352, and 13353 constitutes the proceedings of the 22ndt International Conference on Computational Science, ICCS 2022, held in London, UK, in June 2022.* The total of 175 full papers and 78 short papers presented in this book set were carefully reviewed and selected from 474 submissions. 169 full and 36 short papers were accepted to the main track; 120 full and 42 short papers were accepted to the workshops/ thematic tracks. *The conference was held in a hybrid format
Distributed High Performance And Grid Computing In Computational Biology
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Author : Werner Dubitzky
language : en
Publisher: Springer Science & Business Media
Release Date : 2007-01-03
Distributed High Performance And Grid Computing In Computational Biology written by Werner Dubitzky and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2007-01-03 with Science categories.
The book constitutes the refereed proceedings of the International Workshop on Distributed, High-Performance and Grid Computing in Computational Biology, GCCB 2006, held in Eilat, Israel in January 2007 in conjunction with the 5th European Conference on Computational Biology, ECCB 2006. The 13 revised full papers presented were carefully reviewed and selected from many high quality submissions.
Metagenomics
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Author : Muniyandi Nagarajan
language : en
Publisher: Academic Press
Release Date : 2024-11-05
Metagenomics written by Muniyandi Nagarajan and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-11-05 with Science categories.
Metagenomics: Perspectives, Methods, and Applications, second edition, provides thorough coverage of the growing field of metagenomics. A diverse range of chapters from international experts offer an introduction to the field and examine methods for metagenomic analysis of microbiota, metagenomic computational tools, and recent metagenomic studies in various environments and clinical settings. The emphasis on application makes this text particularly useful for applied researchers, practitioners, clinicians, and students seeking to employ metagenomic approaches to advance knowledge in the biomedical and life sciences. Case study-based application chapters include topics ranging from metagenome tools, metagenomics in oral disease and health, metagenomic insights into the human gut microbiome and metabolic syndromes, and more. This new edition has been fully updated to address the rapid growth and development of metagenomics applications, featuring expert discussion of recent developments and fresh case studies. Newly added chapters instruct in methods and implications of metagenomics in areas of growing focus, such as microbiome research, clinical diagnosis, metagenomic epidemiology, and plant microbe interaction. Data analysis is explained in simple terms for effective use of computational tools, software, and sequencing pipelines. - Features a diverse range of chapters from international experts - Highlights current state-of-the-art and recent advances in the field with current perspectives and case studies - Includes methods, techniques, and various computational software tools and pipelines currently used in metagenomic studies - Provokes new thought and motivations for continued study, with next steps in research discussed at the end of each chapter
Computational Science Iccs 2021
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Author : Maciej Paszynski
language : en
Publisher: Springer Nature
Release Date : 2021-06-11
Computational Science Iccs 2021 written by Maciej Paszynski and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-06-11 with Computers categories.
The six-volume set LNCS 12742, 12743, 12744, 12745, 12746, and 12747 constitutes the proceedings of the 21st International Conference on Computational Science, ICCS 2021, held in Krakow, Poland, in June 2021.* The total of 260 full papers and 57 short papers presented in this book set were carefully reviewed and selected from 635 submissions. 48 full and 14 short papers were accepted to the main track from 156 submissions; 212 full and 43 short papers were accepted to the workshops/ thematic tracks from 479 submissions. The papers were organized in topical sections named: Part I: ICCS Main Track Part II: Advances in High-Performance Computational Earth Sciences: Applications and Frameworks; Applications of Computational Methods in Artificial Intelligence and Machine Learning; Artificial Intelligence and High-Performance Computing for Advanced Simulations; Biomedical and Bioinformatics Challenges for Computer Science Part III: Classifier Learning from Difficult Data; Computational Analysis of Complex Social Systems; Computational Collective Intelligence; Computational Health Part IV: Computational Methods for Emerging Problems in (dis-)Information Analysis; Computational Methods in Smart Agriculture; Computational Optimization, Modelling and Simulation; Computational Science in IoT and Smart Systems Part V: Computer Graphics, Image Processing and Artificial Intelligence; Data-Driven Computational Sciences; Machine Learning and Data Assimilation for Dynamical Systems; MeshFree Methods and Radial Basis Functions in Computational Sciences; Multiscale Modelling and Simulation Part VI: Quantum Computing Workshop; Simulations of Flow and Transport: Modeling, Algorithms and Computation; Smart Systems: Bringing Together Computer Vision, Sensor Networks and Machine Learning; Software Engineering for Computational Science; Solving Problems with Uncertainty; Teaching Computational Science; Uncertainty Quantification for Computational Models *The conference was held virtually. Chapter “Effective Solution of Ill-posed Inverse Problems with Stabilized Forward Solver” is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.
Curriculum Applications In Microbiology Bioinformatics In The Classroom
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Author : Mel Crystal Melendrez
language : en
Publisher: Frontiers Media SA
Release Date : 2021-09-08
Curriculum Applications In Microbiology Bioinformatics In The Classroom written by Mel Crystal Melendrez and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-09-08 with Science categories.