Computational Methods For Estimating The Kinetic Parameters Of Biological Systems
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Computational Methods For Estimating The Kinetic Parameters Of Biological Systems
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Author : Quentin Vanhaelen
language : en
Publisher:
Release Date : 2022
Computational Methods For Estimating The Kinetic Parameters Of Biological Systems written by Quentin Vanhaelen and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2022 with Chemical kinetics categories.
This detailed book provides an overview of various classes of computational techniques, including machine learning techniques, commonly used for evaluating kinetic parameters of biological systems. Focusing on three distinct situations, the volume covers the prediction of the kinetics of enzymatic reactions, the prediction of the kinetics of protein-protein or protein-ligand interactions (binding rates, dissociation rates, binding affinities), and the prediction of relatively large set of kinetic rates of reactions usually found in quantitative models of large biological networks. Written for the highly successful Methods in Molecular Biology series, chapters include the kind of expert implementation advice that leads to successful results. Authoritative and practical, Computational Methods for Estimating the Kinetic Parameters of Biological Systems will be of great interest for researchers working through the challenge of identifying the best type of algorithm and who would like to use or develop a computational method for the estimation of kinetic parameters.
Computational Methods In Systems Biology
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Author : Monika Heiner
language : en
Publisher: Springer
Release Date : 2008-10-05
Computational Methods In Systems Biology written by Monika Heiner and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2008-10-05 with Science categories.
This book constitutes the refereed proceedings of the 6th International Conference on Computational Methods in Systems Biology, CMSB 2008, held in Rostock, Germany, in September 2008. The 21 revised full papers presented together with the summaries of 5 invited papers were carefully reviewed and selected from more than 60 submissions. The papers cover theoretical or applied contributions that are motivated by a biological question focusing on modeling approaches, including process algebra, simulation approaches, analysis methods, in particular model checking and flux analysis, and case studies.
Network Bioscience 2nd Edition
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Author : Marco Pellegrini
language : en
Publisher: Frontiers Media SA
Release Date : 2020-03-27
Network Bioscience 2nd Edition written by Marco Pellegrini and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-03-27 with categories.
Network science has accelerated a deep and successful trend in research that influences a range of disciplines like mathematics, graph theory, physics, statistics, data science and computer science (just to name a few) and adapts the relevant techniques and insights to address relevant but disparate social, biological, technological questions. We are now in an era of 'big biological data' supported by cost-effective high-throughput genomic, transcriptomic, proteomic, metabolomic data collection techniques that allow one to take snapshots of the cells' molecular profiles in a systematic fashion. Moreover recently, also phenotypic data, data on diseases, symptoms, patients, etc. are being collected at nation-wide level thus giving us another source of highly related (causal) 'big data'. This wealth of data is usually modeled as networks (aka binary relations, graphs or webs) of interactions, (including protein-protein, metabolic, signaling and transcription-regulatory interactions). The network model is a key view point leading to the uncovering of mesoscale phenomena, thus providing an essential bridge between the observable phenotypes and 'omics' underlying mechanisms. Moreover, network analysis is a powerful 'hypothesis generation' tool guiding the scientific cycle of 'data gathering', 'data interpretation, 'hypothesis generation' and 'hypothesis testing'. A major challenge in contemporary research is the synthesis of deep insights coming from network science with the wealth of data (often noisy, contradictory, incomplete and difficult to replicate) so to answer meaningful biological questions, in a quantifiable way using static and dynamic properties of biological networks.
Computational Approaches In Drug Discovery Development And Systems Pharmacology
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Author : Rupesh Kumar Gautam
language : en
Publisher: Elsevier
Release Date : 2023-02-15
Computational Approaches In Drug Discovery Development And Systems Pharmacology written by Rupesh Kumar Gautam and has been published by Elsevier this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-02-15 with Medical categories.
Computational Approaches in Drug Discovery, Development and Systems Pharmacology provides detailed information on the use of computers in advancing pharmacology. Drug discovery and development is an expensive and time-consuming practice, and computer-assisted drug design (CADD) approaches are increasing in popularity in the pharmaceutical industry to accelerate the process. With the help of CADD, scientists can focus on the most capable compounds so that they can minimize the synthetic and biological testing pains. This book examines success stories of CADD in drug discovery, drug development and role of CADD in system pharmacology, additionally including a focus on the role of artificial intelligence (AI) and deep machine learning in pharmacology. Computational Approaches in Drug Discovery, Development and Systems Pharmacology will be useful to researchers and academics working in the area of CADD, pharmacology and Bioinformatics. - Explains computer use in pharmacology using real-life case studies - Provides information about biological activities using computer technology, thus allowing for the possible reduction of the number of animals used for research - Describes the role of AI in pharmacology and applications of CADD in various diseases
From Petri Nets To The Grid Paradigm An Engineering And Computing View
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Author : Pasquale De Marco
language : en
Publisher: Pasquale De Marco
Release Date : 2025-04-25
From Petri Nets To The Grid Paradigm An Engineering And Computing View written by Pasquale De Marco and has been published by Pasquale De Marco this book supported file pdf, txt, epub, kindle and other format this book has been release on 2025-04-25 with Technology & Engineering categories.
In a world increasingly driven by interconnected systems, Petri nets have emerged as a powerful tool for modeling and analyzing the behavior of complex systems. "From Petri Nets to the Grid Paradigm: An Engineering and Computing View" provides a comprehensive and up-to-date treatment of Petri nets, encompassing their foundations, extensions, applications, and future directions. This book begins by establishing a solid foundation in Petri net theory, covering basic concepts, modeling techniques, and analysis methods. It then explores advanced topics such as colored Petri nets, timed Petri nets, stochastic Petri nets, and fuzzy Petri nets, providing readers with a deeper understanding of the versatility and applicability of Petri nets in modeling complex systems. The book subsequently delves into the integration of Petri nets with emerging technologies, including the Internet of Things (IoT), cloud computing, and artificial intelligence (AI). It examines how Petri nets can be employed to model and analyze IoT systems, cloud systems, and AI systems, highlighting the benefits and challenges of this approach. Furthermore, the book explores the application of Petri nets in systems biology, demonstrating how Petri nets can be used to model and simulate biological systems. This chapter provides insights into the use of Petri nets in understanding complex biological processes and designing new therapies. Throughout the book, numerous case studies and examples illustrate the practical applications of Petri nets in real-world scenarios. These case studies cover a wide range of domains, including manufacturing, transportation, communication, and healthcare, showcasing the versatility and effectiveness of Petri nets in modeling and analyzing diverse systems. Whether you are a researcher, engineer, or student, "From Petri Nets to the Grid Paradigm" offers a comprehensive and up-to-date treatment of Petri nets, providing a thorough understanding of their foundations, extensions, applications, and future directions. This book is an essential resource for anyone seeking to leverage the power of Petri nets in modeling and analyzing complex systems. If you like this book, write a review on google books!
Computational Methods In Systems Biology
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Author : Ezio Bartocci
language : en
Publisher: Springer
Release Date : 2016-09-03
Computational Methods In Systems Biology written by Ezio Bartocci and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-09-03 with Computers categories.
This book constitutes the refereed proceedings of the 14th International Conference on Computational Methods in Systems Biology, CMSB 2016, held in Cambridge, UK, in September 2016. The 20 full papers, 3 tool papers and 9 posters presented were carefully reviewed and selected from 37 regular paper submissions. The topics include formalisms for modeling biological processes; models and their biological applications; frameworks for model verification, validation, analysis, and simulation of biological systems; high-performance computational systems biology and parallel implementations; model inference from experimental data; model integration from biological databases; multi-scale modeling and analysis methods; and computational approaches for synthetic biology.
Systemic Approaches In Bioinformatics And Computational Systems Biology Recent Advances
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Author : Lecca, Paola
language : en
Publisher: IGI Global
Release Date : 2011-12-31
Systemic Approaches In Bioinformatics And Computational Systems Biology Recent Advances written by Lecca, Paola and has been published by IGI Global this book supported file pdf, txt, epub, kindle and other format this book has been release on 2011-12-31 with Medical categories.
The convergence of biology and computer science was initially motivated by the need to organize and process a growing number of biological observations resulting from rapid advances in experimental techniques. Today, however, close collaboration between biologists, biochemists, medical researchers, and computer scientists has also generated remarkable benefits for the field of computer science. Systemic Approaches in Bioinformatics and Computational Systems Biology: Recent Advances presents new techniques that have resulted from the application of computer science methods to the organization and interpretation of biological data. The book covers three subject areas: bioinformatics, computational biology, and computational systems biology. It focuses on recent, systemic approaches in computer science and mathematics that have been used to model, simulate, and more generally, experiment with biological phenomena at any scale.
Computational Methods For Understanding Bacterial And Archaeal Genomes
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Author : Ying Xu
language : en
Publisher: World Scientific
Release Date : 2008
Computational Methods For Understanding Bacterial And Archaeal Genomes written by Ying Xu and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 2008 with Medical categories.
Over 500 prokaryotic genomes have been sequenced to date, and thousands more have been planned for the next few years. While these genomic sequence data provide unprecedented opportunities for biologists to study the world of prokaryotes, they also raise extremely challenging issues such as how to decode the rich information encoded in these genomes. This comprehensive volume includes a collection of cohesively written chapters on prokaryotic genomes, their organization and evolution, the information they encode, and the computational approaches needed to derive such information. A comparative view of bacterial and archaeal genomes, and how information is encoded differently in them, is also presented. Combining theoretical discussions and computational techniques, the book serves as a valuable introductory textbook for graduate-level microbial genomics and informatics courses.
Computational Methods For Molecular Imaging
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Author : Fei Gao
language : en
Publisher: Springer
Release Date : 2015-06-11
Computational Methods For Molecular Imaging written by Fei Gao and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-06-11 with Technology & Engineering categories.
This volume contains original submissions on the development and application of molecular imaging computing. The editors invited authors to submit high-quality contributions on a wide range of topics including, but not limited to: • Image Synthesis & Reconstruction of Emission Tomography (PET, SPECT) and other Molecular Imaging Modalities • Molecular Imaging Enhancement • Data Analysis of Clinical & Pre-clinical Molecular Imaging • Multi-Modal Image Processing (PET/CT, PET/MR, SPECT/CT, etc.) • Machine Learning and Data Mining in Molecular Imaging. Molecular imaging is an evolving clinical and research discipline enabling the visualization, characterization and quantification of biological processes taking place at the cellular and subcellular levels within intact living subjects. Computational methods play an important role in the development of molecular imaging, from image synthesis to data analysis and from clinical diagnosis to therapy individualization. This work will bring readers from academia and industry up to date on the most recent developments in this field.
Computational Methods In Cell Biology
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Author : Anand R. Asthagiri
language : en
Publisher: Academic Press
Release Date : 2012-04-13
Computational Methods In Cell Biology written by Anand R. Asthagiri and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2012-04-13 with Computers categories.
Computational methods are playing an ever increasing role in cell biology. This volume of Methods in Cell Biology focuses on Computational Methods in Cell Biology and consists of two parts: (1) data extraction and analysis to distill models and mechanisms, and (2) developing and simulating models to make predictions and testable hypotheses. Focuses on computational methods in cell biology Split into 2 parts--data extraction and analysis to distill models and mechanisms, and developing and simulating models to make predictions and testable hypotheses Emphasizes the intimate and necessary connection with interpreting experimental data and proposing the next hypothesis and experiment