Computational Phylogenetics
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Computational Phylogenetics
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Author : Tandy Warnow
language : en
Publisher: Cambridge University Press
Release Date : 2018
Computational Phylogenetics written by Tandy Warnow and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018 with Computers categories.
This book presents the foundations of phylogeny estimation and technical material enabling researchers to develop improved computational methods.
Bioinformatics And Phylogenetics
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Author : Tandy Warnow
language : en
Publisher: Springer
Release Date : 2019-04-08
Bioinformatics And Phylogenetics written by Tandy Warnow and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2019-04-08 with Science categories.
This volume presents a compelling collection of state-of-the-art work in algorithmic computational biology, honoring the legacy of Professor Bernard M.E. Moret in this field. Reflecting the wide-ranging influences of Prof. Moret’s research, the coverage encompasses such areas as phylogenetic tree and network estimation, genome rearrangements, cancer phylogeny, species trees, divide-and-conquer strategies, and integer linear programming. Each self-contained chapter provides an introduction to a cutting-edge problem of particular computational and mathematical interest. Topics and features: addresses the challenges in developing accurate and efficient software for the NP-hard maximum likelihood phylogeny estimation problem; describes the inference of species trees, covering strategies to scale phylogeny estimation methods to large datasets, and the construction of taxonomic supertrees; discusses the inference of ultrametric distances from additive distance matrices, and the inference of ancestral genomes under genome rearrangement events; reviews different techniques for inferring evolutionary histories in cancer, from the use of chromosomal rearrangements to tumor phylogenetics approaches; examines problems in phylogenetic networks, including questions relating to discrete mathematics, and issues of statistical estimation; highlights how evolution can provide a framework within which to understand comparative and functional genomics; provides an introduction to Integer Linear Programming and its use in computational biology, including its use for solving the Traveling Salesman Problem. Offering an invaluable source of insights for computer scientists, applied mathematicians, and statisticians, this illuminating volume will also prove useful for graduate courses on computational biology and bioinformatics.
The Tree With Many Branches
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Author : Tommy Rodriguez
language : en
Publisher: iUniverse
Release Date : 2020-08-20
The Tree With Many Branches written by Tommy Rodriguez and has been published by iUniverse this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-08-20 with Science categories.
Want to build an evolutionary tree? Here’s your chance to learn how. The field of bioinformatics was born out of the need to manage, analyze, and examine raw genomic data in meaningful and exciting ways, such as the discipline of computational phylogenetics would provide. The evolutionary inferences reached among the several peer-reviewed articles contained in this book are neither novel nor breakthrough. However, it is in the application of computational techniques, experiment design, and probabilistic models where this research finds a stronghold. As a matter of practicality, the original manuscripts have been edited for a broader audience due to its highly technical language. The essays compiled in these pages have undergone a facelift, from their original scientific format into a more reader-friendly layout, as to better accommodate two different perspectives – both experts and non-experts alike.
Bayesian Phylogenetics
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Author : Ming-Hui Chen
language : en
Publisher: CRC Press
Release Date : 2014-05-27
Bayesian Phylogenetics written by Ming-Hui Chen and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-05-27 with Mathematics categories.
Offering a rich diversity of models, Bayesian phylogenetics allows evolutionary biologists, systematists, ecologists, and epidemiologists to obtain answers to very detailed phylogenetic questions. Suitable for graduate-level researchers in statistics and biology, Bayesian Phylogenetics: Methods, Algorithms, and Applications presents a snapshot of c
Problem Solving Handbook In Computational Biology And Bioinformatics
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Author : Lenwood S. Heath
language : en
Publisher: Springer Science & Business Media
Release Date : 2010-10-20
Problem Solving Handbook In Computational Biology And Bioinformatics written by Lenwood S. Heath and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2010-10-20 with Science categories.
Bioinformatics is growing by leaps and bounds; theories/algorithms/statistical techniques are constantly evolving. Nevertheless, a core body of algorithmic ideas have emerged and researchers are beginning to adopt a "problem solving" approach to bioinformatics, wherein they use solutions to well-abstracted problems as building blocks to solve larger scope problems. Problem Solving Handbook for Computational Biology and Bioinformatics is an edited volume contributed by world renowned leaders in this field. This comprehensive handbook with problem solving emphasis, covers all relevant areas of computational biology and bioinformatics. Web resources and related themes are highlighted at every opportunity in this central easy-to-read reference. Designed for advanced-level students, researchers and professors in computer science and bioengineering as a reference or secondary text, this handbook is also suitable for professionals working in this industry.
Computational Molecular Evolution
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Author : Ziheng Yang
language : en
Publisher: OUP Oxford
Release Date : 2006-10-05
Computational Molecular Evolution written by Ziheng Yang and has been published by OUP Oxford this book supported file pdf, txt, epub, kindle and other format this book has been release on 2006-10-05 with Science categories.
The field of molecular evolution has experienced explosive growth in recent years due to the rapid accumulation of genetic sequence data, continuous improvements to computer hardware and software, and the development of sophisticated analytical methods. The increasing availability of large genomic data sets requires powerful statistical methods to analyse and interpret them, generating both computational and conceptual challenges for the field. Computational Molecular Evolution provides an up-to-date and comprehensive coverage of modern statistical and computational methods used in molecular evolutionary analysis, such as maximum likelihood and Bayesian statistics. Yang describes the models, methods and algorithms that are most useful for analysing the ever-increasing supply of molecular sequence data, with a view to furthering our understanding of the evolution of genes and genomes. The book emphasizes essential concepts rather than mathematical proofs. It includes detailed derivations and implementation details, as well as numerous illustrations, worked examples, and exercises. It will be of relevance and use to students and professional researchers (both empiricists and theoreticians) in the fields of molecular phylogenetics, evolutionary biology, population genetics, mathematics, statistics and computer science. Biologists who have used phylogenetic software programs to analyze their own data will find the book particularly rewarding, although it should appeal to anyone seeking an authoritative overview of this exciting area of computational biology.
Computational Science Iccs 2001
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Author : Vassil N. Alexandrov
language : en
Publisher: Springer
Release Date : 2003-05-15
Computational Science Iccs 2001 written by Vassil N. Alexandrov and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2003-05-15 with Computers categories.
LNCS volumes 2073 and 2074 contain the proceedings of the International Conference on Computational Science, ICCS 2001, held in San Francisco, California, May 27-31, 2001. The two volumes consist of more than 230 contributed and invited papers that reflect the aims of the conference to bring together researchers and scientists from mathematics and computer science as basic computing disciplines, researchers from various application areas who are pioneering advanced application of computational methods to sciences such as physics, chemistry, life sciences, and engineering, arts and humanitarian fields, along with software developers and vendors, to discuss problems and solutions in the area, to identify new issues, and to shape future directions for research, as well as to help industrial users apply various advanced computational techniques.
Germanic Phylogeny
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Author : Frederik Hartmann
language : en
Publisher: Oxford University Press
Release Date : 2023
Germanic Phylogeny written by Frederik Hartmann and has been published by Oxford University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023 with Computers categories.
This book provides a computational re-evaluation of the genealogical relations between the early Germanic families and of their diversification from their most recent common ancestor, Proto-Germanic. It also proposes a novel computational approach to the problem of linguistic diversification more broadly, using agent-based simulation of speech communities over time. This new method is presented alongside more traditional phylogenetic inference, and the respective results are compared and evaluated. Frederik Hartmann demonstrates that the traditional and novel methods each capture different aspects of this highly complex real-world process; crucially, the new computational approach proposed here offers a new way of investigating the wave-like properties of language relatedness that were previously less accessible. As well as validating the findings of earlier research, the results of this study also generate new insights and shed light on much-debated issues in the field. The conclusion is that the break-up of Germanic should be understood as a gradual disintegration process in which tree-like branching effects are rare.
Distributed Computing Artificial Intelligence Bioinformatics Soft Computing And Ambient Assisted Living
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Author : Sigeru Omatu
language : en
Publisher: Springer
Release Date : 2009-06-06
Distributed Computing Artificial Intelligence Bioinformatics Soft Computing And Ambient Assisted Living written by Sigeru Omatu and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009-06-06 with Computers categories.
This volume (II) contains all publications accepted for the symposiums and workshops held in parallel with the 10th International Work-Conference on Artificial Neural Networks (IWANN 2009), covering a wide spectrum of technological areas such as distributed computing, artificial intelligence, bioinformatics, soft computing and ambient-assisted living: • DCAI 2009 (International Symposium on Distributed Computing and Artificial Intelligence), covering artificial intelligence and its applications in distributed environments, such as the Internet, electronic commerce, mobile communi- tions, wireless devices, distributed computing, and so on. This event accepted a total of 96 submissions selected from a submission pool of 157 papers, from 12 different countries. • IWAAL 2009 (International Workshop of Ambient-Assisted Living), covering solutions aimed at increasing the quality of life, safety and health problems of elderly and disabled people by means of technology. This event accepted a - tal of 42 submissions selected from a submission pool of 78 papers, from 9 d- ferent countries. • IWPACBB 2009 (Third International Workshop on Practical Applications of Computational Biology and Bioinformatics), covering computational biology and bioinformatics as a possibility for knowledge discovery, modelling and - timization tasks, aiming at the development of computational models so that the response of biological complex systems to any perturbation can be p- dicted. This event accepted a total of 39 submissions selected from a subm- sion pool of 75 papers, from 6 different countries.
Numerical Computations With Gpus
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Author : Volodymyr Kindratenko
language : en
Publisher: Springer
Release Date : 2014-07-03
Numerical Computations With Gpus written by Volodymyr Kindratenko and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-07-03 with Computers categories.
This book brings together research on numerical methods adapted for Graphics Processing Units (GPUs). It explains recent efforts to adapt classic numerical methods, including solution of linear equations and FFT, for massively parallel GPU architectures. This volume consolidates recent research and adaptations, covering widely used methods that are at the core of many scientific and engineering computations. Each chapter is written by authors working on a specific group of methods; these leading experts provide mathematical background, parallel algorithms and implementation details leading to reusable, adaptable and scalable code fragments. This book also serves as a GPU implementation manual for many numerical algorithms, sharing tips on GPUs that can increase application efficiency. The valuable insights into parallelization strategies for GPUs are supplemented by ready-to-use code fragments. Numerical Computations with GPUs targets professionals and researchers working in high performance computing and GPU programming. Advanced-level students focused on computer science and mathematics will also find this book useful as secondary text book or reference.