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Graphical Models With R


Graphical Models With R
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Graphical Models With R


Graphical Models With R
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Author : Søren Højsgaard
language : en
Publisher: Springer Science & Business Media
Release Date : 2012-02-22

Graphical Models With R written by Søren Højsgaard and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2012-02-22 with Mathematics categories.


Graphical models in their modern form have been around since the late 1970s and appear today in many areas of the sciences. Along with the ongoing developments of graphical models, a number of different graphical modeling software programs have been written over the years. In recent years many of these software developments have taken place within the R community, either in the form of new packages or by providing an R interface to existing software. This book attempts to give the reader a gentle introduction to graphical modeling using R and the main features of some of these packages. In addition, the book provides examples of how more advanced aspects of graphical modeling can be represented and handled within R. Topics covered in the seven chapters include graphical models for contingency tables, Gaussian and mixed graphical models, Bayesian networks and modeling high dimensional data.



Graphical Models


Graphical Models
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Author : Steffen L. Lauritzen
language : en
Publisher: Clarendon Press
Release Date : 1996-05-02

Graphical Models written by Steffen L. Lauritzen and has been published by Clarendon Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 1996-05-02 with Mathematics categories.


The idea of modelling systems using graph theory has its origin in several scientific areas: in statistical physics (the study of large particle systems), in genetics (studying inheritable properties of natural species), and in interactions in contingency tables. The use of graphical models in statistics has increased considerably over recent years and the theory has been greatly developed and extended. This book provides the first comprehensive and authoritative account of the theory of graphical models and is written by a leading expert in the field. It contains the fundamental graph theory required and a thorough study of Markov properties associated with various type of graphs. The statistical theory of log-linear and graphical models for contingency tables, covariance selection models, and graphical models with mixed discrete-continous variables in developed detail. Special topics, such as the application of graphical models to probabilistic expert systems, are described briefly, and appendices give details of the multivarate normal distribution and of the theory of regular exponential families. The author has recently been awarded the RSS Guy Medal in Silver 1996 for his innovative contributions to statistical theory and practice, and especially for his work on graphical models.



Learning Probabilistic Graphical Models In R


Learning Probabilistic Graphical Models In R
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Author : David Bellot
language : en
Publisher: Packt Publishing Ltd
Release Date : 2016-04-29

Learning Probabilistic Graphical Models In R written by David Bellot and has been published by Packt Publishing Ltd this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-04-29 with Computers categories.


Familiarize yourself with probabilistic graphical models through real-world problems and illustrative code examples in R About This Book Predict and use a probabilistic graphical models (PGM) as an expert system Comprehend how your computer can learn Bayesian modeling to solve real-world problems Know how to prepare data and feed the models by using the appropriate algorithms from the appropriate R package Who This Book Is For This book is for anyone who has to deal with lots of data and draw conclusions from it, especially when the data is noisy or uncertain. Data scientists, machine learning enthusiasts, engineers, and those who curious about the latest advances in machine learning will find PGM interesting. What You Will Learn Understand the concepts of PGM and which type of PGM to use for which problem Tune the model's parameters and explore new models automatically Understand the basic principles of Bayesian models, from simple to advanced Transform the old linear regression model into a powerful probabilistic model Use standard industry models but with the power of PGM Understand the advanced models used throughout today's industry See how to compute posterior distribution with exact and approximate inference algorithms In Detail Probabilistic graphical models (PGM, also known as graphical models) are a marriage between probability theory and graph theory. Generally, PGMs use a graph-based representation. Two branches of graphical representations of distributions are commonly used, namely Bayesian networks and Markov networks. R has many packages to implement graphical models. We'll start by showing you how to transform a classical statistical model into a modern PGM and then look at how to do exact inference in graphical models. Proceeding, we'll introduce you to many modern R packages that will help you to perform inference on the models. We will then run a Bayesian linear regression and you'll see the advantage of going probabilistic when you want to do prediction. Next, you'll master using R packages and implementing its techniques. Finally, you'll be presented with machine learning applications that have a direct impact in many fields. Here, we'll cover clustering and the discovery of hidden information in big data, as well as two important methods, PCA and ICA, to reduce the size of big problems. Style and approach This book gives you a detailed and step-by-step explanation of each mathematical concept, which will help you build and analyze your own machine learning models and apply them to real-world problems. The mathematics is kept simple and each formula is explained thoroughly.



Graphical Models Exponential Families And Variational Inference


Graphical Models Exponential Families And Variational Inference
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Author : Martin J. Wainwright
language : en
Publisher: Now Publishers Inc
Release Date : 2008

Graphical Models Exponential Families And Variational Inference written by Martin J. Wainwright and has been published by Now Publishers Inc this book supported file pdf, txt, epub, kindle and other format this book has been release on 2008 with Computers categories.


The core of this paper is a general set of variational principles for the problems of computing marginal probabilities and modes, applicable to multivariate statistical models in the exponential family.



Probabilistic Graphical Models


Probabilistic Graphical Models
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Author : Daphne Koller
language : en
Publisher: MIT Press
Release Date : 2009-07-31

Probabilistic Graphical Models written by Daphne Koller and has been published by MIT Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009-07-31 with Computers categories.


A general framework for constructing and using probabilistic models of complex systems that would enable a computer to use available information for making decisions. Most tasks require a person or an automated system to reason—to reach conclusions based on available information. The framework of probabilistic graphical models, presented in this book, provides a general approach for this task. The approach is model-based, allowing interpretable models to be constructed and then manipulated by reasoning algorithms. These models can also be learned automatically from data, allowing the approach to be used in cases where manually constructing a model is difficult or even impossible. Because uncertainty is an inescapable aspect of most real-world applications, the book focuses on probabilistic models, which make the uncertainty explicit and provide models that are more faithful to reality. Probabilistic Graphical Models discusses a variety of models, spanning Bayesian networks, undirected Markov networks, discrete and continuous models, and extensions to deal with dynamical systems and relational data. For each class of models, the text describes the three fundamental cornerstones: representation, inference, and learning, presenting both basic concepts and advanced techniques. Finally, the book considers the use of the proposed framework for causal reasoning and decision making under uncertainty. The main text in each chapter provides the detailed technical development of the key ideas. Most chapters also include boxes with additional material: skill boxes, which describe techniques; case study boxes, which discuss empirical cases related to the approach described in the text, including applications in computer vision, robotics, natural language understanding, and computational biology; and concept boxes, which present significant concepts drawn from the material in the chapter. Instructors (and readers) can group chapters in various combinations, from core topics to more technically advanced material, to suit their particular needs.



Handbook Of Graphical Models


Handbook Of Graphical Models
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Author : Marloes Maathuis
language : en
Publisher: CRC Press
Release Date : 2018-11-12

Handbook Of Graphical Models written by Marloes Maathuis and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-11-12 with Mathematics categories.


A graphical model is a statistical model that is represented by a graph. The factorization properties underlying graphical models facilitate tractable computation with multivariate distributions, making the models a valuable tool with a plethora of applications. Furthermore, directed graphical models allow intuitive causal interpretations and have become a cornerstone for causal inference. While there exist a number of excellent books on graphical models, the field has grown so much that individual authors can hardly cover its entire scope. Moreover, the field is interdisciplinary by nature. Through chapters by leading researchers from different areas, this handbook provides a broad and accessible overview of the state of the art. Key features: * Contributions by leading researchers from a range of disciplines * Structured in five parts, covering foundations, computational aspects, statistical inference, causal inference, and applications * Balanced coverage of concepts, theory, methods, examples, and applications * Chapters can be read mostly independently, while cross-references highlight connections The handbook is targeted at a wide audience, including graduate students, applied researchers, and experts in graphical models.



Graphical Models


Graphical Models
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Author : Michael Irwin Jordan
language : en
Publisher: MIT Press
Release Date : 2001

Graphical Models written by Michael Irwin Jordan and has been published by MIT Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2001 with Computers categories.


This book exemplifies the interplay between the general formal framework of graphical models and the exploration of new algorithm and architectures. The selections range from foundational papers of historical importance to results at the cutting edge of research. Graphical models use graphs to represent and manipulate joint probability distributions. They have their roots in artificial intelligence, statistics, and neural networks. The clean mathematical formalism of the graphical models framework makes it possible to understand a wide variety of network-based approaches to computation, and in particular to understand many neural network algorithms and architectures as instances of a broader probabilistic methodology. It also makes it possible to identify novel features of neural network algorithms and architectures and to extend them to more general graphical models.This book exemplifies the interplay between the general formal framework of graphical models and the exploration of new algorithms and architectures. The selections range from foundational papers of historical importance to results at the cutting edge of research. Contributors H. Attias, C. M. Bishop, B. J. Frey, Z. Ghahramani, D. Heckerman, G. E. Hinton, R. Hofmann, R. A. Jacobs, Michael I. Jordan, H. J. Kappen, A. Krogh, R. Neal, S. K. Riis, F. B. Rodríguez, L. K. Saul, Terrence J. Sejnowski, P. Smyth, M. E. Tipping, V. Tresp, Y. Weiss



Bayesian Networks


Bayesian Networks
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Author : Marco Scutari
language : en
Publisher: CRC Press
Release Date : 2021-07-28

Bayesian Networks written by Marco Scutari and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-07-28 with Computers categories.


Bayesian Networks: With Examples in R, Second Edition introduces Bayesian networks using a hands-on approach. Simple yet meaningful examples illustrate each step of the modelling process and discuss side by side the underlying theory and its application using R code. The examples start from the simplest notions and gradually increase in complexity. In particular, this new edition contains significant new material on topics from modern machine-learning practice: dynamic networks, networks with heterogeneous variables, and model validation. The first three chapters explain the whole process of Bayesian network modelling, from structure learning to parameter learning to inference. These chapters cover discrete, Gaussian, and conditional Gaussian Bayesian networks. The following two chapters delve into dynamic networks (to model temporal data) and into networks including arbitrary random variables (using Stan). The book then gives a concise but rigorous treatment of the fundamentals of Bayesian networks and offers an introduction to causal Bayesian networks. It also presents an overview of R packages and other software implementing Bayesian networks. The final chapter evaluates two real-world examples: a landmark causal protein-signalling network published in Science and a probabilistic graphical model for predicting the composition of different body parts. Covering theoretical and practical aspects of Bayesian networks, this book provides you with an introductory overview of the field. It gives you a clear, practical understanding of the key points behind this modelling approach and, at the same time, it makes you familiar with the most relevant packages used to implement real-world analyses in R. The examples covered in the book span several application fields, data-driven models and expert systems, probabilistic and causal perspectives, thus giving you a starting point to work in a variety of scenarios. Online supplementary materials include the data sets and the code used in the book, which will all be made available from https://www.bnlearn.com/book-crc-2ed/



Reasoning With Probabilistic And Deterministic Graphical Models


Reasoning With Probabilistic And Deterministic Graphical Models
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Author : Rina Dechter
language : en
Publisher: Morgan & Claypool Publishers
Release Date : 2019-02-14

Reasoning With Probabilistic And Deterministic Graphical Models written by Rina Dechter and has been published by Morgan & Claypool Publishers this book supported file pdf, txt, epub, kindle and other format this book has been release on 2019-02-14 with Computers categories.


Graphical models (e.g., Bayesian and constraint networks, influence diagrams, and Markov decision processes) have become a central paradigm for knowledge representation and reasoning in both artificial intelligence and computer science in general. These models are used to perform many reasoning tasks, such as scheduling, planning and learning, diagnosis and prediction, design, hardware and software verification, and bioinformatics. These problems can be stated as the formal tasks of constraint satisfaction and satisfiability, combinatorial optimization, and probabilistic inference. It is well known that the tasks are computationally hard, but research during the past three decades has yielded a variety of principles and techniques that significantly advanced the state of the art. This book provides comprehensive coverage of the primary exact algorithms for reasoning with such models. The main feature exploited by the algorithms is the model's graph. We present inference-based, message-passing schemes (e.g., variable-elimination) and search-based, conditioning schemes (e.g., cycle-cutset conditioning and AND/OR search). Each class possesses distinguished characteristics and in particular has different time vs. space behavior. We emphasize the dependence of both schemes on few graph parameters such as the treewidth, cycle-cutset, and (the pseudo-tree) height. The new edition includes the notion of influence diagrams, which focus on sequential decision making under uncertainty. We believe the principles outlined in the book would serve well in moving forward to approximation and anytime-based schemes. The target audience of this book is researchers and students in the artificial intelligence and machine learning area, and beyond.