Information Theoretic Evaluation For Computational Biomedical Ontologies
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Information Theoretic Evaluation For Computational Biomedical Ontologies
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Author : Wyatt Travis Clark
language : en
Publisher: Springer Science & Business Media
Release Date : 2014-01-09
Information Theoretic Evaluation For Computational Biomedical Ontologies written by Wyatt Travis Clark and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-01-09 with Computers categories.
The development of effective methods for the prediction of ontological annotations is an important goal in computational biology, yet evaluating their performance is difficult due to problems caused by the structure of biomedical ontologies and incomplete annotations of genes. This work proposes an information-theoretic framework to evaluate the performance of computational protein function prediction. A Bayesian network is used, structured according to the underlying ontology, to model the prior probability of a protein's function. The concepts of misinformation and remaining uncertainty are then defined, that can be seen as analogs of precision and recall. Finally, semantic distance is proposed as a single statistic for ranking classification models. The approach is evaluated by analyzing three protein function predictors of gene ontology terms. The work addresses several weaknesses of current metrics, and provides valuable insights into the performance of protein function prediction tools.
Natural Language Processing And Cognitive Science
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Author : Bernadette Sharp
language : en
Publisher: Walter de Gruyter GmbH & Co KG
Release Date : 2015-03-10
Natural Language Processing And Cognitive Science written by Bernadette Sharp and has been published by Walter de Gruyter GmbH & Co KG this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-03-10 with Technology & Engineering categories.
Peer reviewed articles from the Natural Language Processing and Cognitive Science (NLPCS) 2014 meeting in October 2014 workshop. The meeting fosters interactions among researchers and practitioners in NLP by taking a Cognitive Science perspective. Articles cover topics such as artificial intelligence, computational linguistics, psycholinguistics, cognitive psychology and language learning.
Information Systems Design And Intelligent Applications
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Author : J. K. Mandal
language : en
Publisher: Springer
Release Date : 2015-01-20
Information Systems Design And Intelligent Applications written by J. K. Mandal and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-01-20 with Technology & Engineering categories.
The second international conference on INformation Systems Design and Intelligent Applications (INDIA – 2015) held in Kalyani, India during January 8-9, 2015. The book covers all aspects of information system design, computer science and technology, general sciences, and educational research. Upon a double blind review process, a number of high quality papers are selected and collected in the book, which is composed of two different volumes, and covers a variety of topics, including natural language processing, artificial intelligence, security and privacy, communications, wireless and sensor networks, microelectronics, circuit and systems, machine learning, soft computing, mobile computing and applications, cloud computing, software engineering, graphics and image processing, rural engineering, e-commerce, e-governance, business computing, molecular computing, nano-computing, chemical computing, intelligent computing for GIS and remote sensing, bio-informatics and bio-computing. These fields are not only limited to computer researchers but also include mathematics, chemistry, biology, bio-chemistry, engineering, statistics, and all others in which computer techniques may assist.
Biological Knowledge Discovery Handbook
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Author : Mourad Elloumi
language : en
Publisher: John Wiley & Sons
Release Date : 2015-02-04
Biological Knowledge Discovery Handbook written by Mourad Elloumi and has been published by John Wiley & Sons this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-02-04 with Computers categories.
The first comprehensive overview of preprocessing, mining, and postprocessing of biological data Molecular biology is undergoing exponential growth in both the volume and complexity of biological data and knowledge discovery offers the capacity to automate complex search and data analysis tasks. This book presents a vast overview of the most recent developments on techniques and approaches in the field of biological knowledge discovery and data mining (KDD) providing in-depth fundamental and technical field information on the most important topics encountered. Written by top experts, Biological Knowledge Discovery Handbook: Preprocessing, Mining, and Postprocessing of Biological Data covers the three main phases of knowledge discovery (data preprocessing, data processing also known as data mining and data postprocessing) and analyzes both verification systems and discovery systems. BIOLOGICAL DATA PREPROCESSING Part A: Biological Data Management Part B: Biological Data Modeling Part C: Biological Feature Extraction Part D Biological Feature Selection BIOLOGICAL DATA MINING Part E: Regression Analysis of Biological Data Part F Biological Data Clustering Part G: Biological Data Classification Part H: Association Rules Learning from Biological Data Part I: Text Mining and Application to Biological Data Part J: High-Performance Computing for Biological Data Mining Combining sound theory with practical applications in molecular biology, Biological Knowledge Discovery Handbook is ideal for courses in bioinformatics and biological KDD as well as for practitioners and professional researchers in computer science, life science, and mathematics.
Man Machine Interactions 2
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Author : Tadeusz Czachorski
language : en
Publisher: Springer Science & Business Media
Release Date : 2011-08-30
Man Machine Interactions 2 written by Tadeusz Czachorski and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2011-08-30 with Technology & Engineering categories.
Man-machine interaction is the interdisciplinary field, focused on a human and a machine in conjunction. It is the intersection of computer science, behavioural sciences, social psychology, ergonomics, security. It encompasses study, design, implementation, and evaluation of small- and large-scale, interacting, computing, hardware and software systems dedicated for human use. Man-machine interaction builds on supportive knowledge from both sides, the machine side providing techniques, methods and technologies relevant for computer graphics, visualisation, programming environments, the human side bringing elements of communication theory, linguistics, social sciences, models of behaviour. The discipline aims to improve ways in which machines and their users interact, making hardware and software systems better adapted to user's needs, more usable, more receptive, and optimised for desired properties. This monograph is the second edition in the series, providing the reader with a selection of high-quality papers dedicated to current progress, new developments and research trends in man-machine interactions area. In particular, the topical subdivisions of this volume include human-computer interfaces, robot control and navigation systems, bio-data analysis and mining, pattern recognition for medical applications, sound, text and image processing, design and decision support, rough and fuzzy systems, crisp and fuzzy clustering, prediction and regression, algorithms and optimisation, and data management systems.
Some Current Advanced Researches On Information And Computer Science In Vietnam
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Author : Quang A. Dang
language : en
Publisher: Springer
Release Date : 2015-02-16
Some Current Advanced Researches On Information And Computer Science In Vietnam written by Quang A. Dang and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-02-16 with Technology & Engineering categories.
This book includes the extended and revised versions of a set of selected papers from the First NAFOSTED Conference on Information and Computer Science (NICS’2014), held at Le Quy Don Technical Academy, Hanoi, Vietnam from 13/Mar./2014 to 14/Mar./2014. The conference was co-organized by The National Foundation for Science and Technology Development (NAFOSTED) and Le Quy Don Technical Academy. The purpose of the NICS conference series is to promote scientific publications in the country and to provide a platform for high quality academic exchange among scientists in the fields of computer science, information and communication. The conference includes five tracks, namely “Computer Science”, “Artificial Intelligence”, “Network Systems”, “Software Engineering”, and “Information Systems”. The papers in this book are among the best contributions at NICS’2014 taken into account the quality of their presentation at the conference and the recommendation of the two experts in the extra round of independent review.
Encyclopedia Of Bioinformatics And Computational Biology
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Author :
language : en
Publisher: Elsevier
Release Date : 2018-08-21
Encyclopedia Of Bioinformatics And Computational Biology written by and has been published by Elsevier this book supported file pdf, txt, epub, kindle and other format this book has been release on 2018-08-21 with Medical categories.
Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics, Three Volume Set combines elements of computer science, information technology, mathematics, statistics and biotechnology, providing the methodology and in silico solutions to mine biological data and processes. The book covers Theory, Topics and Applications, with a special focus on Integrative –omics and Systems Biology. The theoretical, methodological underpinnings of BCB, including phylogeny are covered, as are more current areas of focus, such as translational bioinformatics, cheminformatics, and environmental informatics. Finally, Applications provide guidance for commonly asked questions. This major reference work spans basic and cutting-edge methodologies authored by leaders in the field, providing an invaluable resource for students, scientists, professionals in research institutes, and a broad swath of researchers in biotechnology and the biomedical and pharmaceutical industries. Brings together information from computer science, information technology, mathematics, statistics and biotechnology Written and reviewed by leading experts in the field, providing a unique and authoritative resource Focuses on the main theoretical and methodological concepts before expanding on specific topics and applications Includes interactive images, multimedia tools and crosslinking to further resources and databases
Data Mining In Biomedicine Using Ontologies
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Author : Mihail Popescu
language : en
Publisher: Artech House
Release Date : 2009
Data Mining In Biomedicine Using Ontologies written by Mihail Popescu and has been published by Artech House this book supported file pdf, txt, epub, kindle and other format this book has been release on 2009 with Medical categories.
Presently, a growing number of ontologies are being built and used for annotating data in biomedical research. Thanks to the tremendous amount of data being generated, ontologies are now being used in numerous ways, including connecting different databases, refining search capabilities, interpreting experimental/clinical data, and inferring knowledge. This cutting-edge resource introduces you to latest developments in bio-ontologies. The book provides you with the theoretical foundations and examples of ontologies, as well as applications of ontologies in biomedicine, from molecular levels to clinical levels. You also find details on technological infrastructure for bio-ontologies. This comprehensive, one-stop volume presents a wide range of practical bio-ontology information, offering you detailed guidance in the clustering of biological data, protein classification, gene and pathway prediction, and text mining. More than 160 illustrations support key topics throughout the book.
Computational Intelligence In Medical Informatics
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Author : Arpad Kelemen
language : en
Publisher: Springer Science & Business Media
Release Date : 2008-01-03
Computational Intelligence In Medical Informatics written by Arpad Kelemen and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2008-01-03 with Medical categories.
Medical Informatics (MI) is an emerging interdisciplinary science. This book deals with the application of computational intelligence in MI. Addressing the various issues of medical informatics using different computational intelligence approaches is the novelty of this edited volume. This volume comprises of 15 chapters selected on the basis of fundamental ideas/concepts including an introductory chapter giving the fundamental definitions and some important research challenges.
Data Management Of Protein Interaction Networks
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Author : Mario Cannataro
language : en
Publisher: John Wiley & Sons
Release Date : 2012-02-03
Data Management Of Protein Interaction Networks written by Mario Cannataro and has been published by John Wiley & Sons this book supported file pdf, txt, epub, kindle and other format this book has been release on 2012-02-03 with Computers categories.
Current PPI databases do not offer sophisticated querying interfaces and especially do not integrate existing information about proteins. Current algorithms for PIN analysis use only topological information, while emerging approaches attempt to exploit the biological knowledge related to proteins and kinds of interaction, e.g. protein function, localization, structure, described in Gene Ontology or PDB. The book discusses technologies, standards and databases for, respectively, generating, representing and storing PPI data. It also describes main algorithms and tools for the analysis, comparison and knowledge extraction from PINs. Moreover, some case studies and applications of PINs are also discussed.