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Structural Theories For Dynamical Networks In Biology


Structural Theories For Dynamical Networks In Biology
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Structural Theories For Dynamical Networks In Biology


Structural Theories For Dynamical Networks In Biology
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Author : Atsushi Mochizuki
language : en
Publisher: Springer Nature
Release Date : 2025-06-21

Structural Theories For Dynamical Networks In Biology written by Atsushi Mochizuki and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2025-06-21 with Science categories.


This textbook provides an introduction to theoretical biology using specific topics and explains the main mathematical methods. The book also introduces the “structural theories” developed by the author and his colleagues as new theoretical methods. Structural theories are mathematical theories that determine key aspects of the behavior of dynamical systems from network information alone. The book details the practical applications of these methods across several biological network systems and shows that they are practically useful for analyzing the behaviors of biological systems. The first half of the book focuses on the dynamics that arise from the regulation of biomolecular activity, such as gene expression and protein modification. The second half of the book approaches the understanding of the dynamics of complex systems composed of many biomolecules. Each chapter covers current and important topics in biological research, and its description of how biological phenomena are theoretically elucidated effectively conveys the importance and appeal of mathematical methods. This book is not only a comprehensive textbook on theoretical biology, but also a study guide for learning mathematical methods. It also serves as a specialized reference for systematically learning new mathematical theories. The “Mathematical Methods” section at the end of each chapter offers a concise summary and facilitates efficient learning for readers, along with the exercises. Target readers of this book are from upper undergraduate students to senior researchers interested in the dynamics of complex network systems in biology. It appeals to both mathematical and experimental biologists, as well as chemists and physicists.



Structural Theories For Dynamical Networks In Biology


Structural Theories For Dynamical Networks In Biology
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Author : Atsushi Mochizuki
language : en
Publisher: Springer
Release Date : 2025-06-18

Structural Theories For Dynamical Networks In Biology written by Atsushi Mochizuki and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2025-06-18 with Science categories.


This textbook provides an introduction to theoretical biology using specific topics and explains the main mathematical methods. The book also introduces the “structural theories” developed by the author and his colleagues as new theoretical methods. Structural theories are mathematical theories that determine key aspects of the behavior of dynamical systems from network information alone. The book details the practical applications of these methods across several biological network systems and shows that they are practically useful for analyzing the behaviors of biological systems. The first half of the book focuses on the dynamics that arise from the regulation of biomolecular activity, such as gene expression and protein modification. The second half of the book approaches the understanding of the dynamics of complex systems composed of many biomolecules. Each chapter covers current and important topics in biological research, and its description of how biological phenomena are theoretically elucidated effectively conveys the importance and appeal of mathematical methods. This book is not only a comprehensive textbook on theoretical biology, but also a study guide for learning mathematical methods. It also serves as a specialized reference for systematically learning new mathematical theories. The “Mathematical Methods” section at the end of each chapter offers a concise summary and facilitates efficient learning for readers, along with the exercises. Target readers of this book are from upper undergraduate students to senior researchers interested in the dynamics of complex network systems in biology. It appeals to both mathematical and experimental biologists, as well as chemists and physicists.



Networks From Biology To Theory


Networks From Biology To Theory
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Author : Jianfeng Feng
language : en
Publisher: Springer Science & Business Media
Release Date : 2007-09-04

Networks From Biology To Theory written by Jianfeng Feng and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2007-09-04 with Computers categories.


Recent decades have witnessed the thriving development of new mathematical, computational and theoretical approaches, such as bioinformatics and neuroinformatics, to tackle fundamental issues in biology. These approaches focus no longer on individual units, such as nerve cells or genes, but rather on dynamic patterns of interactions between them. This volume explores the concept in full, featuring contributions from a global group of contributors, many of whom are pre-eminent in their field.



Structure And Dynamics Of Asymmetric Interactions


Structure And Dynamics Of Asymmetric Interactions
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Author : Naohito Chino
language : en
Publisher: Springer Nature
Release Date : 2025-01-03

Structure And Dynamics Of Asymmetric Interactions written by Naohito Chino and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2025-01-03 with Mathematics categories.


This book integrates the fundamentals of asymmetric multidimensional scaling, spectral graph theory, graph embedding theory, and various dynamical systems theories, that deal with the static and dynamic aspects of asymmetric phenomena. In this way, it provides a comprehensive introduction to theories and methods for analyzing phenomena observed universally in social, behavioral, economical, geographical, biological, neural, chemical reaction and other networks. The topics addressed in here include the notions of asymmetric similarity matrices, graph spectra, dimension reduction, and difference and differential equations to describe the dynamics of networks, bifurcation of vector fields, Mandelbrot sets, fractals and chaos, and Hilbert spaces. Illustrated by carefully chosen examples and supported by extensive simulation studies, the book is highly recommended to readers who seek to discover static asymmetric structures among members or nodes. It also appeals to those who want to understand the kinds of dynamics that are theoretically possible in their research domains.



Physical Theory In Biology Foundations And Explorations


Physical Theory In Biology Foundations And Explorations
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Author : Charles J Lumsden
language : en
Publisher: World Scientific
Release Date : 1997-04-19

Physical Theory In Biology Foundations And Explorations written by Charles J Lumsden and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 1997-04-19 with Science categories.


What is the physics of life and why does it matter? The essays in this book probe this question, celebrating modern biology's vibrant dialog with theoretical physics — a scientific adventure in which biological understanding is enriched by physical theory without losing its own inherent traditions and perspectives. The book explores organic complexity and self-organization through research applications to embryology, cell biology, behavioral neuroscience, and evolution. The essays will excite the interest of physics students in thinking about biology's “grand challenges”, in part by means of self-contained introductions to theoretical computer science, symmetry methods in bifurcation theory, and evolutionary games. Seasoned investigators in both the physical and life sciences will also find challenging ideas and applications presented in this volume.This is a Print On Demand title. We no longer stock the original but will recreate a copy for you. While all efforts are made to ensure that quality is the same as the original, there may be differences in some areas of the design and packaging.



Theory And Control Of Dynamical Systems Applications To Systems In Biology


Theory And Control Of Dynamical Systems Applications To Systems In Biology
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Author : Stig I Andersson
language : en
Publisher: World Scientific
Release Date : 1992-05-26

Theory And Control Of Dynamical Systems Applications To Systems In Biology written by Stig I Andersson and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 1992-05-26 with categories.


For the mathematical modeling of complex system behavior, dynamical systems play an increasing role. The flexibility and very rich phenomenology exhibited by such systems make them indispensible in this context. Control theory for dynamical systems is also a highly active field of research where a number of important results have been achieved recently.This combined course and workshop deals with recent results regarding dynamical systems and control theory, primarily in differential geometric terms as well as the applications of these fields to biological systems, with an emphasis on various aspects of the immune system and on neural networks.



Computational Chemistry Methods In Structural Biology


Computational Chemistry Methods In Structural Biology
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Author : Christo Christov
language : en
Publisher: Academic Press
Release Date : 2011-09-23

Computational Chemistry Methods In Structural Biology written by Christo Christov and has been published by Academic Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2011-09-23 with Science categories.


Published continuously since 1944, the Advances in Protein Chemistry and Structural Biology serial has been a continuous, essential resource for protein chemists. Covering reviews of methodology and research in all aspects of protein chemistry, including purification/expression, proteomics, modeling and structural determination and design, each volume brings forth new information about protocols and analysis of proteins while presenting the most recent findings from leading experts in a broad range of protein-related topics. This volume features articles on Computational Chemistry methods in Structural Biology. Essential resource for protein chemists This volume features articles on Computational Chemistry methods in Structural Biology



Molecular Level Atomistic And Structural Insights On Biological Macromolecules Inhibition And Dynamics Studies


Molecular Level Atomistic And Structural Insights On Biological Macromolecules Inhibition And Dynamics Studies
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Author : Chandrabose Selvaraj
language : en
Publisher: Frontiers Media SA
Release Date : 2024-03-14

Molecular Level Atomistic And Structural Insights On Biological Macromolecules Inhibition And Dynamics Studies written by Chandrabose Selvaraj and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-03-14 with Science categories.


Everything in a living organism relies on biological macromolecules, which have the role of enzymatic chemical transformations, formation of structures, transportation, catalysis, and regulation of biological processes. They are complex biological structures that require an atomistic understanding. A molecular understanding of biological macromolecules has had a massive impact on the pharmaceutical, biotechnological, and chemical industries. Specifically, new enzymatic structures are being discovered through various experimental and computational methods, by describing an atomistic-level insight into function, mechanism, role in reactions and their inhibition. Those atom-level illustrations are mainly focused through enzyme kinetics, enzyme inhibition, mutational and conformational analysis through quantum mechanical and molecular dynamics methods.



Dynamical Networks In Physics And Biology


Dynamical Networks In Physics And Biology
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Author : D. Beysens
language : en
Publisher: Springer Science & Business Media
Release Date : 2013-06-29

Dynamical Networks In Physics And Biology written by D. Beysens and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2013-06-29 with Science categories.


The 1997 Les Houches workshop on "Dynamical Network in Physics and Biology" was the third in a series of meetings "At the Frontier between Physics and Biology". Our objective with these workshops is to create a truly interdisciplinary forum for researchers working on outstanding problems in biology, but using different approaches (physical, chemical or biological). Generally speaking, the biologists are trained in the particular and motivated by the specifics, while, in contrast, the physicists deal with generic and "universal" models. All agree about the necessity of developing "robust" models. The specific aim of the workshop was to bridge the gap between physics and biology in the particular field of interconnected dynamical networks. The proper functioning of a living organism of any complexity requires the coordinated activity of a great number of "units". Units, or, in physical terms, degrees of freedom that couple to one another, typically form networks. The physical or biological properties of interconnected networks may drastically differ from those of the individual units: the whole is not simply an assembly of its parts, as can be demonstrated by the following examples. Above a certain (critical) concentration the metallic islands, randomly distributed in an insulating matrix, form an interconnected network. At this point the macroscopic conductivity of the system becomes finite and the amorphous metal is capable of carrying current. The value of the macroscopic conductivity typically is very different from the conductivity of the individual metallic islands.



Systems Biology


Systems Biology
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Author : Edda Klipp
language : en
Publisher: John Wiley & Sons
Release Date : 2013-06-20

Systems Biology written by Edda Klipp and has been published by John Wiley & Sons this book supported file pdf, txt, epub, kindle and other format this book has been release on 2013-06-20 with Medical categories.


This advanced textbook is tailored to the needs of introductory course in Systems Biology. It has a compagnion website (www.wiley-vch.de/home/systemsbiology)with solutions to questions in the book and several additional extensive working models. The book is related to the very successful previous title 'Systems Biology in Practice' and has incorporated the feedback and suggestions from many lecturers worldwide. The book addresses biologists as well as engineers and computer scientists. The interdisciplinary team of acclaimed authors worked closely together to ensure a comprehensive coverage with no overlaps in a homogenous and compelling style.