Metabolomics Data Processing And Data Analysis Current Best Practices
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Metabolomics Data Processing And Data Analysis Current Best Practices
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Author : Justin Van Der Hooft
language : en
Publisher: Mdpi AG
Release Date : 2021-09-10
Metabolomics Data Processing And Data Analysis Current Best Practices written by Justin Van Der Hooft and has been published by Mdpi AG this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-09-10 with Computers categories.
Metabolomics data analysis strategies are central to transforming raw metabolomics data files into meaningful biochemical interpretations that answer biological questions or generate novel hypotheses. This book contains a variety of papers from a Special Issue around the theme "Best Practices in Metabolomics Data Analysis". Reviews and strategies for the whole metabolomics pipeline are included, whereas key areas such as metabolite annotation and identification, compound and spectral databases and repositories, and statistical analysis are highlighted in various papers. Altogether, this book contains valuable information for researchers just starting in their metabolomics career as well as those that are more experienced and look for additional knowledge and best practice to complement key parts of their metabolomics workflows.
Computational Methods For Microbiome Analysis Volume 2
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Author : Setubal
language : en
Publisher: Frontiers Media SA
Release Date : 2023-01-04
Computational Methods For Microbiome Analysis Volume 2 written by Setubal and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-01-04 with Science categories.
Metabolomics
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Author : Ron Wehrens
language : en
Publisher: CRC Press
Release Date : 2019-08-19
Metabolomics written by Ron Wehrens and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2019-08-19 with Mathematics categories.
Metabolomics is the scientific study of the chemical processes in a living system, environment and nutrition. It is a relatively new omics science, but the potential applications are wide, including medicine, personalized medicine and intervention studies, food and nutrition, plants, agriculture and environmental science. The topics presented and discussed in this book are based on the European Molecular Biology Organization (EMBO) practical courses in metabolomics bioinformatics taught to those working in the field, from masters to postgraduate students, PhDs, postdoctoral and early PIs. The book covers the basics and fundamentals of data acquisition and analytical technologies, but the primary focus is data handling and data analysis. The mentioning and usage of a particular data analysis tool has been avoided; rather, the focus is on the concepts and principles of data processing and analysis. The material has been class-tested and includes lots of examples, computing and exercises. Key Features: Provides an overview of qualitative /quantitative methods in metabolomics Offers an introduction to the key concepts of metabolomics, including experimental design and technology Covers data handling, processing, analysis, data standards and sharing Contains lots of examples to illustrate the topics Includes contributions from some of the leading researchers in the field of metabolomics with extensive teaching experiences
Current Trends In Targeted And Non Targeted Metabolomics In Analytical Toxicology
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Author : Geraldine M. Dowling
language : en
Publisher: Frontiers Media SA
Release Date : 2025-06-19
Current Trends In Targeted And Non Targeted Metabolomics In Analytical Toxicology written by Geraldine M. Dowling and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2025-06-19 with Science categories.
This article collection emphasizes the substantial potential and versatility of metabolomic technologies in clarifying biological mechanisms, discovering biomarkers, and distinguishing pathological conditions. Several studies highlighted metabolomics applied to traditional medicine. Metabolomics profiling also effectively contributed to forensic investigations, improving accuracy in estimating post-mortem intervals through metabolite time-dependency and robustness against external factors like anticoagulants. Furthermore, metabolomic studies elucidated biochemical responses to pharmaceutical agents, illustrated by assessments of colistin-induced nephro- and neurotoxicity at therapeutic doses. Investigations into metabolic fingerprints provided insights into nutritionally influenced health conditions (obesity-related fat distribution) and infectious diseases (such as pediatric tuberculous meningitis) pinpointing significant biomarkers and metabolic pathways. Finally, advancements in analytical methods, particularly ion mobility and multidimensional chromatography coupled with mass spectrometry, were reviewed, reinforcing their important role and future promise in increasing resolution, sensitivity, and interpretability of metabolomic data.
Processing Metabolomics And Proteomics Data With Open Software
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Author : Robert Winkler
language : en
Publisher: Royal Society of Chemistry
Release Date : 2020-03-16
Processing Metabolomics And Proteomics Data With Open Software written by Robert Winkler and has been published by Royal Society of Chemistry this book supported file pdf, txt, epub, kindle and other format this book has been release on 2020-03-16 with Science categories.
Metabolomics and proteomics allow deep insights into the chemistry and physiology of biological systems. This book expounds open-source programs, platforms and programming tools for analysing metabolomics and proteomics mass spectrometry data. In contrast to commercial software, open-source software is created by the academic community, which facilitates the direct interaction between users and developers and accelerates the implementation of new concepts and ideas. The first section of the book covers the basics of mass spectrometry, experimental strategies, data operations, the open-source philosophy, metabolomics, proteomics and statistics/ data mining. In the second section, active programmers and users describe available software packages. Included tutorials, datasets and code examples can be used for training and for building custom workflows. Finally, every reader is invited to participate in the open science movement.
Plant Metabolomics
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Author : Kazuki Saito
language : en
Publisher: Springer Science & Business Media
Release Date : 2006-06-29
Plant Metabolomics written by Kazuki Saito and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2006-06-29 with Science categories.
Metabolomics – which deals with all metabolites of an organism – is a rapidly-emerging sector of post-genome research fields. It plays significant roles in a variety of fields from medicine to agriculture and holds a fundamental position in functional genomics studies and their application in plant biotechnology. This volume comprehensively covers plant metabolomics for the first time. The chapters offer cutting-edge information on analytical technology, bioinformatics and applications. They were all written by leading researchers who have been directly involved in plant metabolomics research throughout the world. Up-to-date information and future developments are described, thereby producing a volume which is a landmark of plant metabolomics research and a beneficial guideline to graduate students and researchers in academia, industry, and technology transfer organizations in all plant science fields.
Current Challenges In Modeling Cellular Metabolism
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Author : Daniel Machado
language : en
Publisher: Frontiers Media SA
Release Date : 2016-01-21
Current Challenges In Modeling Cellular Metabolism written by Daniel Machado and has been published by Frontiers Media SA this book supported file pdf, txt, epub, kindle and other format this book has been release on 2016-01-21 with Biology (General) categories.
Mathematical and computational models play an essential role in understanding the cellular metabolism. They are used as platforms to integrate current knowledge on a biological system and to systematically test and predict the effect of manipulations to such systems. The recent advances in genome sequencing techniques have facilitated the reconstruction of genome-scale metabolic networks for a wide variety of organisms from microbes to human cells. These models have been successfully used in multiple biotechnological applications. Despite these advancements, modeling cellular metabolism still presents many challenges. The aim of this Research Topic is not only to expose and consolidate the state-of-the-art in metabolic modeling approaches, but also to push this frontier beyond the current edge through the introduction of innovative solutions. The articles presented in this e-book address some of the main challenges in the field, including the integration of different modeling formalisms, the integration of heterogeneous data sources into metabolic models, explicit representation of other biological processes during phenotype simulation, and standardization efforts in the representation of metabolic models and simulation results.
Systemic Approaches In Bioinformatics And Computational Systems Biology Recent Advances
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Author : Lecca, Paola
language : en
Publisher: IGI Global
Release Date : 2011-12-31
Systemic Approaches In Bioinformatics And Computational Systems Biology Recent Advances written by Lecca, Paola and has been published by IGI Global this book supported file pdf, txt, epub, kindle and other format this book has been release on 2011-12-31 with Medical categories.
The convergence of biology and computer science was initially motivated by the need to organize and process a growing number of biological observations resulting from rapid advances in experimental techniques. Today, however, close collaboration between biologists, biochemists, medical researchers, and computer scientists has also generated remarkable benefits for the field of computer science. Systemic Approaches in Bioinformatics and Computational Systems Biology: Recent Advances presents new techniques that have resulted from the application of computer science methods to the organization and interpretation of biological data. The book covers three subject areas: bioinformatics, computational biology, and computational systems biology. It focuses on recent, systemic approaches in computer science and mathematics that have been used to model, simulate, and more generally, experiment with biological phenomena at any scale.
Encyclopedia Of Analytical Science
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Author :
language : en
Publisher: Elsevier
Release Date : 2019-04-02
Encyclopedia Of Analytical Science written by and has been published by Elsevier this book supported file pdf, txt, epub, kindle and other format this book has been release on 2019-04-02 with Science categories.
The third edition of the Encyclopedia of Analytical Science, Ten Volume Set is a definitive collection of articles covering the latest technologies in application areas such as medicine, environmental science, food science and geology. Meticulously organized, clearly written and fully interdisciplinary, the Encyclopedia of Analytical Science, Ten Volume Set provides foundational knowledge across the scope of modern analytical chemistry, linking fundamental topics with the latest methodologies. Articles will cover three broad areas: analytical techniques (e.g., mass spectrometry, liquid chromatography, atomic spectrometry); areas of application (e.g., forensic, environmental and clinical); and analytes (e.g., arsenic, nucleic acids and polycyclic aromatic hydrocarbons), providing a one-stop resource for analytical scientists. Offers readers a one-stop resource with access to information across the entire scope of modern analytical science Presents articles split into three broad areas: analytical techniques, areas of application and and analytes, creating an ideal resource for students, researchers and professionals Provides concise and accessible information that is ideal for non-specialists and readers from undergraduate levels and higher