Protocols In Advanced Genomics And Allied Techniques

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Protocols In Advanced Genomics And Allied Techniques

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Author : Aruna Pal
language : en
Publisher: Springer Nature
Release Date : 2021-11-14

Protocols In Advanced Genomics And Allied Techniques written by Aruna Pal and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2021-11-14 with Science categories.

This laboratory manual includes the latest tools and techniques involved in genomic research. It starts with an introductory chapter on genomics and the various tools and applications involved. The initial chapters present protocols for basic techniques such as DNA isolation, electrophoresis, PCR, cDNA synthesis etc. The book then goes on to describe more advanced techniques such as next-generation sequencing, exome sequencing, use of RNAi, RNAseq, genome editing, single cell genomics etc. Each topic includes a brief description, information on the principles involved, materials & methods, protocol, and expected results, with diagrams and graphs. All protocols are presented in a very lucid and precise way, to make it easy for readers to follow and replicate them.

Machine Learning Methods For Multi Omics Data Integration

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Author : Abedalrhman Alkhateeb
language : en
Publisher: Springer Nature
Release Date : 2023-11-13

Machine Learning Methods For Multi Omics Data Integration written by Abedalrhman Alkhateeb and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-11-13 with Computers categories.

The advancement of biomedical engineering has enabled the generation of multi-omics data by developing high-throughput technologies, such as next-generation sequencing, mass spectrometry, and microarrays. Large-scale data sets for multiple omics platforms, including genomics, transcriptomics, proteomics, and metabolomics, have become more accessible and cost-effective over time. Integrating multi-omics data has become increasingly important in many research fields, such as bioinformatics, genomics, and systems biology. This integration allows researchers to understand complex interactions between biological molecules and pathways. It enables us to comprehensively understand complex biological systems, leading to new insights into disease mechanisms, drug discovery, and personalized medicine. Still, integrating various heterogeneous data types into a single learning model also comes with challenges. In this regard, learning algorithms have been vital in analyzing and integratingthese large-scale heterogeneous data sets into one learning model. This book overviews the latest multi-omics technologies, machine learning techniques for data integration, and multi-omics databases for validation. It covers different types of learning for supervised and unsupervised learning techniques, including standard classifiers, deep learning, tensor factorization, ensemble learning, and clustering, among others. The book categorizes different levels of integrations, ranging from early, middle, or late-stage among multi-view models. The underlying models target different objectives, such as knowledge discovery, pattern recognition, disease-related biomarkers, and validation tools for multi-omics data. Finally, the book emphasizes practical applications and case studies, making it an essential resource for researchers and practitioners looking to apply machine learning to their multi-omics data sets. The book covers data preprocessing, feature selection, and model evaluation, providing readers with a practical guide to implementing machine learning techniques on various multi-omics data sets.

Advances In Plant Disease Management

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Author : Pranjib K. Chakrabarty
language : en
Publisher: CRC Press
Release Date : 2023-12-20

Advances In Plant Disease Management written by Pranjib K. Chakrabarty and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-12-20 with Science categories.

Advances in Plant Disease Management: Volume I: Fundamental and Basic Research is an invaluable compilation for researchers/students/stakeholders/policymakers in agriculture. The book aims to offer the latest understanding of fundamental and basic research fronts toward managing crop plants diseases. After clearly explaining the updated knowledge on the host immune system, and pathogen’s interplay with the host as unraveled through genomics, bioinformatics, and molecular studies, this book equips readers with the knowledge to confidently account for them during the formulation of management strategies for major crop plant diseases. The book offers comprehensive coverage of the research advances in plant disease management, including: Newer insight into the host-pathogen interaction, including effector-driven pathogenesis in different host-pathogen systems Updates on plant defense pathways leading to resistance to pathogens Use of novel molecules, antagonists, and genome-editing tools toward manipulating host resistance Plant protection policies that support the agricultural production system from a global perspective

Multi Omics Approach To Investigate Endophyte Diversity

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Author : Mukesh Meena
language : en
Publisher: Springer Nature
Release Date : 2025-05-16

Multi Omics Approach To Investigate Endophyte Diversity written by Mukesh Meena and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2025-05-16 with Technology & Engineering categories.

This book deals with the multi-omics approaches to investigate the diversity of endophytes and their interaction with plants in diversified ecological systems. This book helps to integrate the omics approaches to understand the detailed structure of plant-microbial interactions and the mechanism of plant-microbe responses under various environmental conditions. It discusses different omics technologies including metabolomics, genomics, metagenomics, and volatilomics in plant disease. It also incorporates parts of the ecology and genetics of fungal endophytes, particularly how they identify with the host genome and the synthesis of significant and beneficial products. The proteomic trends of fungal endophytes is scrutinized, offering valuable insights for biotechnological applications. The book further explores the impact of fungal endophytes on nutrient cycling within the rhizosphere microbiome, providing a holistic view of their influence on nutrient dynamics and related microbialcommunities. This book serves as a reference resource for researchers and practitioners working towards advancements in agriculture, environmental science, and biotechnology.

Recent Advances In Agricultural Research

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Author : Alper Kürşat DEMIRKAYA
language : en
Publisher: Livre de Lyon
Release Date : 2023-03-25

Recent Advances In Agricultural Research written by Alper Kürşat DEMIRKAYA and has been published by Livre de Lyon this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-03-25 with Social Science categories.

Recent Advances in Agricultural Research

Handbook Of Food Bioactive Ingredients

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Author : Seid Mahdi Jafari
language : en
Publisher: Springer Nature
Release Date : 2023-09-13

Handbook Of Food Bioactive Ingredients written by Seid Mahdi Jafari and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-09-13 with Technology & Engineering categories.

Bioactive ingredients, including both bioactive compounds and bioactive live organisms, are present in small amounts in natural sources such as fruits and vegetables. These ingredients have been continuously investigated during the last few decades and the epidemiological data suggest that their intake is associated with significant decreased risk of various disorders and chronic diseases owing to their anti-oxidant, anti-bacterial and anti-inflammatory qualities. Some of these natural ingredients such as catechins, curcumin, resveratrol, oleuropein, quercetin, rutin, hesperidin, sulforaphane, ellagic acid, and anthocyanins, have been studied as factors with possible direct or indirect effect on specific molecular pathways which are playing vital roles in the association with the pathophysiology of the chronic diseases such as cancer. In light of this, natural foods and food-derived products rich in bioactives have received recent growing attention. It has been reported that frequent consumption of fruits, vegetables, and their associated natural products have many health-promoting benefits that protect against degenerative illnesses including heart disease, arthritis, cancer, immune system decline, brain dysfunction, inflammation and cataracts. Functional foods and medicinal supplements containing encapsulated bioactive materials will be the future of new emerging products in the food and pharma industries. Such products present therapeutical and medicinal properties that can prevent and/or cure specific chronic diseases and disorders. Handbook Of Bioactive Ingredients provides a systematic overview of different food bioactive ingredients describing their chemistry, structure, functionality, safety/toxicity, oral delivery and their applications in functional foods. Detailed chapters will describe various bioactive ingredients including polyphenolic compounds such as phenolic acids, flavonoids and anthocyanins, carotenoids, sterols such as non-oxygenated carotenoids, xanthophylls and phytosterols, bioactive peptides such as marine bioactive peptides, animal bioactive peptides, plant bioactive peptides, microbial bioactive peptides, essential fatty acids like fish and marine oils and plant oils, live organisms like probiotics and yeasts, essential oils and oleoresins like monoterpens, sequiterpens and oleoresins, vitamins and minerals including liposoluble vitamins, hydrosoluble vitamins and trace minerals), and other bioactive compounds including prebiotics, oligosaccharides, dietary fibers and beta-glucan. This book is the first comprehensive collection of scientific evidence form published literature on natural bioactive ingredients.

Microbial Biofilm Dynamics

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Author : Ashutosh Kumar Shukla
language : en
Publisher: CRC Press
Release Date : 2025-08-01

Microbial Biofilm Dynamics written by Ashutosh Kumar Shukla and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2025-08-01 with Science categories.

This book explores the dynamics of microbial biofilms, examining their role in both oral and systemic diseases, emphasizing developmental models, and presenting various characterization and detection methodologies. Divided into three sections, the introductory section covers fundamental concepts, including microbial biofilm understanding, the critical role of the extracellular matrix, antimicrobial resistance mechanisms, and the relevance of biofilms to the dental and medical fields. It also explores the development of novel antimicrobial therapeutic strategies for biofilm control, including diverse approaches like light-, nanoparticle-, peptide-, phage-, and phytochemical-based strategies, along with surface modification techniques. The second section navigates the diverse spectrum of biofilm complexity, introducing laboratory models such as microtiter plate formation, dynamic formation, active attachment, and in situ and in vivo formation models, thus providing a comprehensive understanding of experimental setups. The third section focuses on crucial analytical methods for biofilm studies, covering techniques for quantifying total biomass, cultivable cells, and metabolism. It further describes technical approaches to biofilm matrix analysis, Omics techniques, flow-cytometry analysis, imaging techniques, and the electrochemical detection of biofilms. An overview of machine learning approaches in biofilm research is also covered. This book is tailored for researchers, scientists, and students of microbiology. Key Features: Provides an in-depth exploration of microbial biofilms, covering their dynamics, associations with oral and systemic diseases, and emphasizing developmental models Covers the role of the extracellular matrix, antimicrobial resistance mechanisms, and the development of novel antimicrobial therapeutic strategies Explores a diverse spectrum of biofilm complexity through various laboratory models Focuses on crucial analytical methods, covering techniques for quantifying total biomass, cultivable cells, and metabolic activity Describes techniques for biofilm matrix analysis, Omics techniques, flow-cytometry analysis, imaging techniques, electrochemical detection, and the application of machine learning in biofilm research

Current Trends In Fisheries Biotechnology

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Author : Bijay Kumar Behera
language : en
Publisher: Springer Nature
Release Date : 2024-07-24

Current Trends In Fisheries Biotechnology written by Bijay Kumar Behera and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2024-07-24 with Science categories.

This book discusses information on recent trends in fisheries biotechnology. It addresses various aspects, such as metagenomics, proteomics, surrogacy, and nano-biosensor applications in fisheries and aquaculture. This is a sunrise sector and provides nutritional security to millions of people globally. Recent developments in biotechnology, such as genomics, proteomics, bioremediation, and nanotechnology, are highly useful for the sustainable development of fisheries and aquaculture. Furthermore, mitochondrial markers, surrogacy, and epigenetics reprogramming have high potential for fisheries and aquaculture advancements. Aquatic ecosystem health surveillance is also very essential for the conservation and management of fisheries biodiversity in natural ecosystems and has also been covered in the book. This book is suitable for undergraduate and graduate students and researchers in fisheries science. It will also be helpful for various written examinations for scientist and assistant professor aspirants in this field, officials of government developmental departments, and allied agricultural sciences. Progressive fish farmers, entrepreneurs, aquaculturists, and individuals involved in the aquaculture industry will find this book valuable.

Functional Plant Genomics

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Author : J F Morot-Gaudry
language : en
Publisher: CRC Press
Release Date : 2013-11-13

Functional Plant Genomics written by J F Morot-Gaudry and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2013-11-13 with Science categories.

The openings offered by functional genomics reconciles organism biology and molecular biology, in order to define an integrative biology that should allow new insights about how a phenotype is built up from a genotype in interaction with its environment. This book covers a wide area of concepts and methods in genomics. This range from international

Plant Biology And Biotechnology

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Author : Bir Bahadur
language : en
Publisher: Springer
Release Date : 2015-06-19

Plant Biology And Biotechnology written by Bir Bahadur and has been published by Springer this book supported file pdf, txt, epub, kindle and other format this book has been release on 2015-06-19 with Science categories.

Plant genomics and biotechnology have recently made enormous strides, and hold the potential to benefit agriculture, the environment and various other dimensions of the human endeavor. It is no exaggeration to claim that the twenty-first century belongs to biotechnology. Knowledge generation in this field is growing at a frenetic pace, and keeping abreast of the latest advances and calls on us to double our efforts. Volume II of this two-part series addresses cutting-edge aspects of plant genomics and biotechnology. It includes 37 chapters contributed by over 70 researchers, each of which is an expert in his/her own field of research. Biotechnology has helped to solve many conundrums of plant life that had long remained a mystery to mankind. This volume opens with an exhaustive chapter on the role played by thale cress, Arabidopsis thaliana, which is believed to be the Drosophila of the plant kingdom and an invaluable model plant for understanding basic concepts in plant biology. This is followed by chapters on bioremediation, biofuels and biofertilizers through microalgal manipulation, making it a commercializable prospect; discerning finer details of biotic stress with plant-fungal interactions; and the dynamics of abiotic and biotic stresses, which also figure elsewhere in the book. Breeding crop plants for desirable traits has long been an endeavor of biotechnologists. The significance of molecular markers, marker assisted selection and techniques are covered in a dedicated chapter, as are comprehensive reviews on plant molecular biology, DNA fingerprinting techniques, genomic structure and functional genomics. A chapter dedicated to organellar genomes provides extensive information on this important aspect. Elsewhere in the book, the newly emerging area of epigenetics is presented as seen through the lens of biotechnology, showcasing the pivotal role of DNA methylation in effecting permanent and transient changes to the genome. Exclusive chapters deal with bioinformatics and systems biology. Handy tools for practical applications such as somatic embryogenesis and micropropagation are included to provide frontline information to entrepreneurs, as is a chapter on somaclonal variation. Overcoming barriers to sexual incompatibility has also long been a focus of biotechnology, and is addressed in chapters on wide hybridization and hybrid embryo rescue. Another area of accomplishing triploids through endosperm culture is included as a non-conventional breeding strategy. Secondary metabolite production through tissue cultures, which is of importance to industrial scientists, is also covered. Worldwide exchange of plant genetic material is currently an essential topic, as is conserving natural resources in situ. Chapters on in vitro conservation of extant, threatened and other valuable germplasms, gene banking and related issues are included, along with an extensive account of the biotechnology of spices – the low-volume, high-value crops. Metabolic engineering is another emerging field that provides commercial opportunities. As is well known, there is widespread concern over genetically modified crops among the public. GM crops are covered, as are genetic engineering strategies for combating biotic and abiotic stresses where no other solutions are in sight. RNAi- and micro RNA- based strategies for crop improvement have proved to offer novel alternatives to the existing non-conventional techniques, and detailed information on these aspects is also included. The book’s last five chapters are devoted to presenting the various aspects of environmental, marine, desert and rural biotechnology. The state-of-the-art coverage on a wide range of plant genomics and biotechnology topics will be of great interest to post-graduate students and researchers, including the employees of seed and biotechnology companies, and to instructors in the fields of plant genetics, breeding and biotechnology.