Statistical Thermodynamics Of Protein Folding
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Lectures On Statistical Physics And Protein Folding
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Author : Kerson Huang
language : en
Publisher: World Scientific
Release Date : 2005
Lectures On Statistical Physics And Protein Folding written by Kerson Huang and has been published by World Scientific this book supported file pdf, txt, epub, kindle and other format this book has been release on 2005 with Science categories.
This book introduces an approach to protein folding from the point of view of kinetic theory. There is an abundance of data on protein folding, but few proposals are available on the mechanism driving the process. Here, presented for the first time, are suggestion on possible research directions, as developed by the author in collaboration with C. C. Lin. The first half of this invaluable book contains a concise but relatively complete review of relevant topics in statistical mechanics and kinetic theory. It includes standard topics such as thermodynamics, the Maxwell-Boltzmann distribution, and ensemble theory. Special discussions include the dynamics of phase transitions, and Brownian motion as an illustration of stochastic processes. The second half develops topics in molecular biology and protein structure, with a view to discovering mechanisms underlying protein folding. Attention is focused on the energy flow through the protein in its folded state. A mathematical model, based on the Brownian motion of coupled harmonic oscillators, is worked out in the appendix.
Statistical Thermodynamics Of Protein Folding
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Author : Ming-Hong Hao
language : en
Publisher:
Release Date : 1994
Statistical Thermodynamics Of Protein Folding written by Ming-Hong Hao and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 1994 with Protein folding categories.
Statistical Mechanics Protein Structure And Protein Substrate Interactions
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Author : Sebastian Doniach
language : en
Publisher: Springer Science & Business Media
Release Date : 2013-11-22
Statistical Mechanics Protein Structure And Protein Substrate Interactions written by Sebastian Doniach and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2013-11-22 with Science categories.
A number of factors have come together in the last couple of decades to define the emerging interdisciplinary field of structural molecular biology. First, there has been the considerable growth in our ability to obtain atomic-resolution structural data for biological molecules in general, and proteins in particular. This is a result of advances in technique, both in x-ray crystallography, driven by the development of electronic detectors and of synchrotron radiation x-ray sources, and by the development ofNMR techniques which allow for inference of a three-dimensional structure of a protein in solution. Second, there has been the enormous development of techniques in DNA engineering which makes it possible to isolate and clone specific molecules of interest in sufficient quantities to enable structural measurements. In addition, the ability to mutate a given amino acid sequence at will has led to a new branch of biochemistry in which quantitative measurements can be made assessing the influence of a given amino acid on the function of a biological molecule. A third factor, resulting from the exponential increase in computing power available to researchers, has been the emergence of a growing body of people who can take the structural data and use it to build atomic-scale models of biomolecules in order to try and simulate their motions in an aqueous environment, thus helping to provide answers to one of the most basic questions of molecular biology: the relation of structure to function.
Theory Of Phase Transitions In Polypeptides And Proteins
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Author : Alexander V. Yakubovich
language : en
Publisher: Springer Science & Business Media
Release Date : 2011-09-01
Theory Of Phase Transitions In Polypeptides And Proteins written by Alexander V. Yakubovich and has been published by Springer Science & Business Media this book supported file pdf, txt, epub, kindle and other format this book has been release on 2011-09-01 with Science categories.
There are nearly 100 000 different protein sequences encoded in the human genome, each with its own specific fold. Understanding how a newly formed polypeptide sequence finds its way to the correct fold is one of the greatest challenges in the modern structural biology. The aim of this thesis is to provide novel insights into protein folding by considering the problem from the point of view of statistical mechanics. The thesis starts by investigating the fundamental degrees of freedom in polypeptides that are responsible for the conformational transitions. This knowledge is then applied in the statistical mechanics description of helix↔coil transitions in polypeptides. Finally, the theoretical formalism is generalized to the case of proteins in an aqueous environment. The major novelty of this work lies in combining (a) a formalism based on fundamental physical properties of the system and (b) the resulting possibility of describing the folding↔unfolding transitions quantitatively. The clear physical nature of the formalism opens the way to further applications in a large variety of systems and processes.
Lattice Models Of Protein Folding Dynamics And Thermodynamics
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Author : Andrzej Koliński
language : en
Publisher: Landes Bioscience
Release Date : 1996
Lattice Models Of Protein Folding Dynamics And Thermodynamics written by Andrzej Koliński and has been published by Landes Bioscience this book supported file pdf, txt, epub, kindle and other format this book has been release on 1996 with Medical categories.
Solvent Induced Interactions And Forces In Protein Folding
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Author : Arieh Ben-Naim
language : en
Publisher: Springer Nature
Release Date : 2023-06-12
Solvent Induced Interactions And Forces In Protein Folding written by Arieh Ben-Naim and has been published by Springer Nature this book supported file pdf, txt, epub, kindle and other format this book has been release on 2023-06-12 with Science categories.
This monograph presents the molecular theory and necessary tools for the study of solvent-induced interactions and forces. After introducing the reader to the basic definitions of solvent-induced interactions, the author provides a brief analysis of the statistical thermodynamics. The book thoroughly overviews the connection of those interactions with thermodynamics and consequently focuses on specifically discussing the hydrophobic-hydrophilic interactions and forces. The importance of the implementation of hydrophilic interactions and forces in various biochemical processes is thoroughly analyzed, while evidence based on theory, experiments, and simulated calculations supporting that hydrophilic interactions and forces are far more important than the corresponding hydrophobic effects in many biochemical processes such as protein folding, self-assembly of proteins, molecular recognitions, are described in detail. This title is of great interest to students and researchers working in the fields of chemistry, physics, biochemistry, and molecular biology.
Statistical Mechanics Protein Structure And Protein Substrate Interactions
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Author : Sebastian Doniach
language : en
Publisher:
Release Date : 2014-09-01
Statistical Mechanics Protein Structure And Protein Substrate Interactions written by Sebastian Doniach and has been published by this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-09-01 with categories.
Statistical Physics Of Biomolecules
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Author : Daniel M. Zuckerman
language : en
Publisher: CRC Press
Release Date : 2010-06-02
Statistical Physics Of Biomolecules written by Daniel M. Zuckerman and has been published by CRC Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2010-06-02 with Mathematics categories.
From the hydrophobic effect to protein-ligand binding, statistical physics is relevant in almost all areas of molecular biophysics and biochemistry, making it essential for modern students of molecular behavior. But traditional presentations of this material are often difficult to penetrate. Statistical Physics of Biomolecules: An Introduction brin
Protein Actions Principles And Modeling
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Author : Ivet Bahar
language : en
Publisher: Garland Science
Release Date : 2017-02-14
Protein Actions Principles And Modeling written by Ivet Bahar and has been published by Garland Science this book supported file pdf, txt, epub, kindle and other format this book has been release on 2017-02-14 with Science categories.
Protein Actions: Principles and Modeling is aimed at graduates, advanced undergraduates, and any professional who seeks an introduction to the biological, chemical, and physical properties of proteins. Broadly accessible to biophysicists and biochemists, it will be particularly useful to student and professional structural biologists and molecular biophysicists, bioinformaticians and computational biologists, biological chemists (particularly drug designers) and molecular bioengineers. The book begins by introducing the basic principles of protein structure and function. Some readers will be familiar with aspects of this, but the authors build up a more quantitative approach than their competitors. Emphasizing concepts and theory rather than experimental techniques, the book shows how proteins can be analyzed using the disciplines of elementary statistical mechanics, energetics, and kinetics. These chapters illuminate how proteins attain biologically active states and the properties of those states. The book ends with a synopsis the roles of computational biology and bioinformatics in protein science.
Thermodynamics And Statistical Mechanics Of Macromolecular Systems
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Author : Michael Bachmann
language : en
Publisher: Cambridge University Press
Release Date : 2014-04-24
Thermodynamics And Statistical Mechanics Of Macromolecular Systems written by Michael Bachmann and has been published by Cambridge University Press this book supported file pdf, txt, epub, kindle and other format this book has been release on 2014-04-24 with Computers categories.
Reviewing statistical mechanics concepts for analysis of macromolecular structure formation processes, for graduate students and researchers in physics and biology.